Methylobacter sp. S3L5C: KKZ03_12800
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Entry
KKZ03_12800 CDS
T08037
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mesl
Methylobacter sp. S3L5C
Pathway
mesl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KKZ03_12800 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesl03019
]
KKZ03_12800 (rnr)
03016 Transfer RNA biogenesis [BR:
mesl03016
]
KKZ03_12800 (rnr)
Enzymes [BR:
mesl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KKZ03_12800 (rnr)
Messenger RNA biogenesis [BR:
mesl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KKZ03_12800 (rnr)
Transfer RNA biogenesis [BR:
mesl03016
]
Prokaryotic type
tRNA degradation factors
KKZ03_12800 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_Dis3
Myco_19_kDa
Motif
Other DBs
NCBI-ProteinID:
UOA07178
LinkDB
All DBs
Position
2873042..2875333
Genome browser
AA seq
763 aa
AA seq
DB search
MSSKSKKDVDFNSTKDPYAQREAEKYENPIPSRELILSALEHAGKPLSRVDIAKAFSLEN
EDDLEALRRRLRAMERDGQLLFNRGQQYCLVNNKDLIVGRIIGHPDGFGFVRPDDGSDDL
YLSPREMNPLLHNDRAMVRIAGIDKKGRREGAIVEILERNTHQIVGRLYKEDGFTYVVPD
NKNIAQTLLVQKGGAGKAKQGQIVIAEITDQPTKLRQPIGRVIEVLGDHLAPGLEIEMAI
RSHQLPNIWPDELLEEIKSLSAEVPESAKEGRVDLRNTALVTIDGEDARDFDDAVYCKRT
PKGWKLLVAIADVSHYVQVNSELDKEAKNRSTSVYFPEQVIPMLPEILSNGLCSLNPDVD
RLCMVCELGIDEQGKVVRSRFYDAVMRSHARLTYNEVAKILVDGDKVLAEKYKPIMPHLR
ELYALYKVMRVSREERGAMDFDTQETRIVFGEERKIEKIVPVVRNDAHKLIEEFMITANS
AAAKYLNAKKIPKLLRIHDGPSADKLLNLKTFLGELGLKFGGGVNPTPLDYMHLVESVKN
RPDAHLIQTVLLRSMSQAVYSPDLKGHFGLALEAYAHFTSPIRRYPDLLVHRAIRHCLLG
KKIETFVYGVPDMILLGEHCSANERRADDATRDVVSWLKCEYMLDKIGEEFPGIISAVTS
FGFFVELADIYVEGLVHISNLGQDYYHFDPTSHQLKGERTNINFRLGDSVLIKVARVDLD
EKKMDFELVQKDGSAKKAGAVKKAEGTDKPKKRRRKRKPSPKV
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgaagtctaaaaaagacgttgattttaattcaacaaaagatccatacgctcag
cgcgaagctgaaaagtatgaaaaccccattcctagccgtgagttaatactttcagcttta
gagcatgcgggaaaaccgttgtcgcgcgttgatatcgcgaaggcattttctcttgaaaat
gaagatgacctcgaagctctccgccgacgtttgagggcaatggaacgcgatggccaatta
ttatttaatcggggacagcaatactgtctggttaataataaggatttaattgttggccgc
attattggtcatccggatggctttggttttgttcggccggatgatggttccgacgatttg
tacttgtcaccccgcgaaatgaatcccttgctgcataatgatcgagctatggtacgtata
gccgggattgacaagaaaggccgtcgtgagggcgcaattgttgaaattctggaaagaaat
actcaccagatagtcggacgtctttataaagaagacggctttacctacgttgtgcctgat
aataaaaatatagcgcaaacgcttttagtgcagaaaggtggcgctggtaaagccaagcaa
ggacaaattgttattgctgaaattaccgatcaaccgactaaattacgccagcctattggc
cgggttattgaagtattaggtgatcatcttgcgcccggtctggaaatagaaatggcgatt
cggtctcaccaattgcctaatatctggccagatgaactgttggaagaaatcaagtcgctg
agtgcggaagtccctgaatctgccaaggaaggtcgcgttgatttgcgaaatacggcattg
gttaccattgatggtgaagatgcacgggattttgatgatgccgtgtattgcaaaagaacg
ccaaaaggctggaaattactggtagcgattgccgatgtttcgcattatgtgcaggtcaat
agcgaattggacaaagaggctaaaaatcgaagcacttcagtctattttcctgagcaagtc
attcccatgctgccggaaatattatccaacggcttgtgttcactaaatcctgatgttgat
cgcttgtgtatggtttgcgagttaggcatagatgaacagggtaaagttgtacggtcacgt
ttttatgatgcggtcatgcgttctcatgcacgcttgacttacaacgaagttgcaaaaata
ctggttgatggcgataaggttctggctgaaaaatataagccaataatgccgcatttacgt
gagttatacgcactttataaagtcatgcgcgtgagtcgtgaagagcgaggggcaatggat
tttgatacccaggaaacccgaattgtttttggtgaagagcggaaaatcgaaaagatagtg
ccggtagtgcgtaacgatgcgcacaagctgattgaagaatttatgattaccgccaacagt
gcggcagcgaagtatttgaatgccaaaaaaatacccaagctgttacggatacatgatggt
ccaagcgcggataaattactgaatctgaaaacctttttgggtgagttgggcttaaaattt
ggtggcggcgttaatccgacaccgctggattatatgcacctggtggaatcggttaagaac
cgaccagatgcgcatttaattcagactgttttattgcgatccatgtcgcaagcggtttac
agccctgatttaaaaggtcattttggcttggcgttggaggcttatgcgcattttacctcg
cctattcgacgttatcctgatttgttggtacatcgcgccattcgccattgtttactcggt
aaaaaaatagaaacatttgtttatggcgttcctgacatgattttgttgggtgagcattgt
tcggccaatgagagacgcgctgatgatgcgactcgcgatgtagtcagttggcttaaatgt
gaatatatgttggataaaatcggtgaagaatttcccggtattatttccgcagtaacttca
tttggcttttttgttgagcttgccgatatttatgtagaaggcttggtgcatatcagtaat
ttggggcaggattattatcattttgatccgacaagtcaccagttaaaaggtgagcgcacc
aatattaatttccgtttgggtgatagcgtcttaatcaaggtggctcgtgttgatcttgat
gaaaagaaaatggattttgaattggtgcaaaaagacggttctgcaaaaaaagccggtgct
gtaaaaaaagcagaaggtacggataagcctaaaaaaagacgcaggaaaaggaaaccttca
cctaaagtttag
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