Methylobacter sp. S3L5C: KKZ03_16025
Help
Entry
KKZ03_16025 CDS
T08037
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
mesl
Methylobacter sp. S3L5C
Pathway
mesl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mesl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
KKZ03_16025 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesl03400
]
KKZ03_16025 (sbcB)
Enzymes [BR:
mesl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
KKZ03_16025 (sbcB)
DNA repair and recombination proteins [BR:
mesl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
KKZ03_16025 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KKZ03_16025 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KKZ03_16025 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
BPSS1860
CD59
Motif
Other DBs
NCBI-ProteinID:
UOA07748
LinkDB
All DBs
Position
complement(3581765..3583213)
Genome browser
AA seq
482 aa
AA seq
DB search
MPERNPNTQTFYWHDYETFGIDPQRDRAVQFAGLRTDADFNVIEDPLVIYCKPASDCLPN
PDSCLITGITPQLAEQKGVCEAEFIGRIHQQLVQPNTCTLGYNNLRFDDEVTRNCLYRNF
YDPYAREWQNGNSRWDLIDVVRAARALRPEGINWPVNDDGRPSLRLDQLTVANGIAHEAA
HDALSDVYATIGIAKLVSQAQPKLYQFLLHNRGKAKVLELLQLGSFNPVVHISGMYPIVK
NGLAIVLPLCKHPTNNNGIIVYDLSVDPEPLLTLSIEAIQQRLFTATDDLPEGVTRIPLK
TVHINKCPVVAPVSVIKPDDAQRLAIDWVLCLSNIDKIKAAKGLVKKLAAVFSGHTYAEQ
DSDPDLSIYSGGFFSEADRQKMVTIREMSPEQLATSAMSFNDARLPEMLFRYRARNYPET
LSADEQLKWHELCQNRLTGRQSGASITLDAYLARLEELRSNSNSNMAIINALDAYAASLC
KD
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacgcaaccccaacacgcaaaccttttattggcacgattacgaaactttcggt
attgatcctcagcgagaccgggcggtgcaatttgccggtcttcgcaccgatgctgatttt
aatgttatcgaagatcctctggttatttattgtaaaccggcctcagattgcctgccaaac
cctgattcctgtctgattaccggcattaccccacagttggctgaacaaaaaggcgtttgt
gaagccgagtttattggccggatacaccaacaacttgttcagcccaatacctgtaccctg
ggttataacaatctgcgttttgatgatgaagttacccgtaactgcctgtatcgtaacttt
tatgatccctatgcccgcgaatggcaaaatggcaattcccgctgggaccttattgatgtg
gttagagctgcaagagcgttacggcctgaaggcataaattggccggttaatgatgacggc
agacccagtttgcgacttgatcaattaacggttgccaatggcattgctcacgaagctgcg
catgatgcgctgtcagatgtttatgcaaccatcggcatcgctaaattagtcagtcaagcc
cagccaaaattgtatcagtttcttttgcataataggggtaaagccaaagttttggagttg
cttcagttaggcagctttaatccggtggtacatatatccggtatgtaccctatcgttaag
aacggccttgccattgtcttgcctctttgcaagcacccgaccaataacaatggaattatt
gtttatgatttgtcggttgatcctgagccattgctgactttatcaatagaagccattcag
caacgactatttaccgcgacggatgacttgcccgaaggggtaacgagaataccgctaaaa
accgtgcatattaataagtgcccggttgtagcgccggtgtctgttatcaagccggacgat
gcacagcgactggcgattgattgggttttatgtctgagcaatattgacaaaattaaagcg
gctaaaggtttggttaaaaaattggctgctgtatttagcggtcatacttatgccgagcag
gattccgaccccgatttgtccatctatagtggcggctttttctctgaagccgaccggcag
aaaatggtaaccattagggaaatgtctccagagcagttggcaacatcagccatgagtttc
aacgatgcccgtctccctgaaatgctttttagatatagggcgcgtaattatcccgaaaca
ctcagtgctgatgagcagttaaaatggcatgaactttgccagaatcggttaaccggcagg
caatccggagccagtattacccttgatgcttatttggcacgactggaagaattacgcagt
aacagcaatagtaacatggctattattaacgccctcgatgcttatgctgctagtttgtgt
aaagattaa
DBGET
integrated database retrieval system
