Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2: EJ066_24075
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Entry
EJ066_24075 CDS
T05904
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mesm
Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2
Pathway
mesm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJ066_24075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesm03019
]
EJ066_24075
Enzymes [BR:
mesm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJ066_24075
Messenger RNA biogenesis [BR:
mesm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJ066_24075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AZN99957
LinkDB
All DBs
Position
complement(4980041..4981450)
Genome browser
AA seq
469 aa
AA seq
DB search
MTNENTLLDTDAGELSGFAALGITGALLKATNAAGFTDPKPIQAQAIPPQLEGRDIFGIA
QTGSGKTAAFALPILSKIIGLGTKRRPKTARALILAPTRELAVQIEETIKLLAKGAHVST
ALVLGGVSRFSQVKKIAPGVDVLIATPGRLTDLVREGDLVLADTKWLVLDEGDRMLDMGF
INDVKRIARATAPDRQTVLFSATMPAEIAELAKGLLKNPIRVEVAPHSTAAAEIVQGVVL
ARTKQKRQVLSKMLADEAMKSVIIFSRTKHGADRVTKDLDRDGFKAAVIHGNKSQNARQK
ALNDFRDGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAI
TLCDPSENSKLRQVERIIRTKLPVVADHLGSPDPQRNPAEKNERFEPANDRNDRNGRRDG
RRPGGQNNGKKRFGDKPAFAGERKPEGAKPFKGNNKRRFGGKRPAARAA
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaacgaaaacactttactcgatacagacgctggggaactctccggtttcgcagca
cttggaattacgggcgcgctgctcaaggccaccaatgccgccggcttcaccgatccgaag
ccgatccaggcccaggcgatcccgccgcagctcgaaggccgtgacattttcggcatcgcc
cagactggttccggcaagaccgcggcgttcgcgctgccgatcctgtcgaagatcatcggg
ctcggcaccaagcgccggccaaagaccgcccgtgcgctgatcctggcgccgacgcgcgaa
ctcgccgtgcagatcgaagagacgatcaagctgctcgccaagggcgcgcatgtctcgaca
gcactcgtgctcggcggcgtctcgcgcttcagccaggtgaagaagatcgctcccggcgtc
gacgtccttatcgccacgcccggccggctgaccgacctggtgcgtgagggcgatctcgtg
cttgccgacaccaaatggctggtgctggacgaaggcgaccgcatgctcgacatgggcttc
atcaacgacgtcaagcgcatcgccagggcgaccgcgccggaccggcagacggtgctgttc
tcggcgaccatgccggccgagatcgcagaattggccaagggcctgctgaagaacccgatt
cgtgtcgaagtggcgcctcacagcaccgcggcggccgagatcgtgcagggcgtcgtcctt
gcccgcaccaagcagaagcggcaggtgctatccaagatgcttgccgatgaggcgatgaag
tccgtcatcatcttttcgcgcaccaagcatggcgccgacagggtgaccaaggacctcgat
cgcgacggcttcaaggccgccgtcatccacggcaacaagtcgcagaacgcccgccagaag
gcactgaacgacttccgcgatggctcggtgcgcattcttgtggcgacggatatcgcggcg
cgcggcatcgacgtgccgggcatcagccatgtggtgaatttcgacctgccggatgaggcg
gagagctatgtccaccgcatcggccgcactggccgcaacggcatggacggcatcgcgatc
acgctttgcgatccttccgaaaacagcaagctgcgccaggtcgagcgcatcatccgcacc
aagctgcctgttgttgccgaccatctcggcagccccgatccccagcgcaatccggccgaa
aagaacgaacgcttcgaaccagctaatgatcgcaacgaccgcaatggccgtcgcgacggc
aggcggcccggcggccagaacaacggcaagaagcgtttcggcgacaagccggcctttgcc
ggcgagcgcaagccggaaggcgcaaagcccttcaagggcaacaacaaacgacgcttcggc
ggcaagcggccggcggcacgggctgcgtaa
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