Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2: EJ066_26045
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Entry
EJ066_26045 CDS
T05904
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mesm
Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2
Pathway
mesm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJ066_26045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesm03019
]
EJ066_26045
Messenger RNA biogenesis [BR:
mesm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EJ066_26045
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AZO00307
LinkDB
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Position
complement(5373291..5374961)
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AA seq
556 aa
AA seq
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MAKAENAELVFVPLGGVGEIGMNFALYGYGPANAREWIVVDVGVTFPDASLPGVDLVLPD
TRFIEENIANLRGIVITHAHEDHYGALLDTWPKLKAPVWMTPFGAGLLEAKRQGEQGAPK
IPLTIYRAGEKFTVGPFEIEAIPVAHSIPEPMSLAITTPAGTVIHTGDWKIDPAPTIGPM
TDEARFRAYGDKGVLALICDSTNALREGDSPSEVAVGEGLKGVIQSAKGRVAVTTFSSNV
GRIVSIAKAARDAGRQCLVLGRSLKRVIDVADELGYMDGLPEFIAEEDFGFIPRENLVII
CTGSQGEPLAALAKLSRDEMKSVSLTSGDTVVFSSRTIPGNEKGILEIKNRLIDLGIKII
EDGDALVHVSGHPRRSELRKMYEWVRPEIGVPVHGEAAHLVAQGSLMSVSGIGQVAQVRD
GDMLRLYPGAATIIDQVPFGRIYKDGRLIGTDQAMGIRDRRKLSFAGHVAVNVVLDDRYE
LAGDPDLVAIGVAEADGRGESLEDLMIDAAIGAVDSIPRQRRKDLDLVQEAVRRAVRGAA
NEAWGKKPLVTVFVTR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagcggaaaacgccgagctcgtcttcgtgccgctcggcggcgtcggcgagatc
ggcatgaacttcgccctctatggctatgggccggccaatgcccgcgaatggatcgtcgtc
gatgtcggcgtgacctttcccgatgccagcctgcccggcgtcgacctggtgctgcccgac
acgcgtttcatagaggagaatatcgccaatctgcgcggcatcgtcatcacccatgcgcat
gaggaccattacggcgcgctgctcgacacatggccgaagctcaaggcgccggtctggatg
acgccgttcggcgccggtttgctggaagccaagcggcagggcgagcagggcgcgccgaag
attccgttgacgatctaccgggccggcgaaaaattcaccgtcggcccgttcgagatcgag
gccatcccggtcgcgcattcgattcccgagccgatgtcattggcgatcaccacgccggcc
ggcaccgtcatccacaccggcgactggaagatcgatccggcgccgacgatcgggccgatg
accgacgaggcccgcttccgcgcctatggcgacaagggcgtgctggcgctgatctgcgat
tccaccaatgcgctgcgggaaggcgattcgccgtcggaagtggcggtgggggagggcctc
aagggcgtcatccagagcgccaagggccgcgtcgccgtcaccaccttttcctccaatgtc
gggcgcatcgtttccattgccaaggccgcacgcgatgccggacgccaatgcctggtgctc
ggccgttcgctgaagcgcgtcatcgatgtggctgatgaactcggctatatggacgggctg
cccgagttcatcgccgaggaggattttgggttcatcccgcgcgaaaacctcgtcatcatc
tgcaccggcagccagggcgagccgcttgcggcactggcgaaactgtcgcgcgacgagatg
aaatcggtgtcgctgacatcgggcgacaccgtggtgttctcctcgcgcaccatccccggc
aacgagaaggggattctcgagatcaagaaccgcctgatcgatctcggcatcaagatcatc
gaggacggcgatgcgctggtgcatgtctccggccatccgcgccgcagcgaattgcgcaag
atgtacgaatgggtgcgcccggagatcggcgtgccggtgcatggcgaggcggcgcatctg
gtggcgcagggctcgctgatgtcggtgtccggcatcggccaggtggcgcaggtgcgcgac
ggcgacatgctgcggctctatcccggtgcggcgacgatcatcgaccaggtgccgttcggc
cgcatctacaaggacggcaggctgatcggcaccgaccaggcgatgggcattcgcgaccgg
cgcaaactgtccttcgccggccatgtcgcggtcaatgtcgtgctcgacgacagatatgag
ctcgccggcgatcccgacctggtcgccatcggcgtcgccgaggccgatggccgcggcgag
agcctggaagacctgatgatcgatgcggcaatcggcgccgtggactccatcccccgtcag
cgccgaaaagacctcgacctcgtgcaggaggcggtgcgccgcgccgtccgcggcgccgcc
aatgaagcgtggggcaagaagccgctggtgactgtattcgtcacgcggtga
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