Aquibium oceanicum: BSQ44_00550
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Entry
BSQ44_00550 CDS
T04603
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
meso
Aquibium oceanicum
Pathway
meso03420
Nucleotide excision repair
meso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSQ44_00550
03430 Mismatch repair
BSQ44_00550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meso03400
]
BSQ44_00550
Enzymes [BR:
meso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSQ44_00550
DNA repair and recombination proteins [BR:
meso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSQ44_00550
MMR (mismatch excision repair)
Other MMR factors
BSQ44_00550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
Cas_Cas4
AAA_30
DUF2800
Motif
Other DBs
NCBI-ProteinID:
APH70035
UniProt:
A0A1L3SL20
LinkDB
All DBs
Position
complement(116073..118847)
Genome browser
AA seq
924 aa
AA seq
DB search
MKLTTEQAYAIGHAGGNLQLIACAGSGKTEVVAQHITRLLTPQAEGGMGLKPANIVAFTF
TEKAAAELKQRVLDRCRERLPGLTGMAEMYIGTIHGFSLDLLRTEVPQYLKYDVLNEVQQ
VLFVDRNSAKSGLTATSTLQGAKLKRYVDTRLYIEAMSILRESAVDWKALKGTTILEGFG
AYTTLLHERDMFDYSAILQCAVEALEKDETLRARMAQRIKIIIVDEYQDVNPIQERIVRQ
LHGLGAAVKVVGDDDQTIYQWRGSDVGNILSFADRYAPVSTIKLEANFRSTPGITDVARL
VIEKNASRLDKAMQSADAQSYEAGDIVALQFTSPDEEADYIAKICKALRGTMIEEGAGKR
PISWSDMSVLVRYTKMGAPIRRAFEREGIPFVSVGMDTLFDAAEGQAARLLFYFMANRAT
QDDVVQAWRAANLGVPEGMLDAAITAAEATRAKMAVEDQDVRFSVYNIQRQFMGFLEEIG
LKEELVPGGRGPQVFYNLGKFSQAISDFESIYFHSRPLQKYESFAGFLEHQAEDAYGQSS
GAEDKLASFDAVQILTIHRAKGLQWPVVFIPQLVRNQFPASPRGGRNVWHLIPSAAVAGQ
GRFRGSEADERRLFYVAVTRSQKHLHMTTASTPGSNRYVHPSVFFHDVLESKFVKRLRQS
YDARERGDPRSKASISNVNLSFSDIRYYFECPYQFKMRTLYGFNAPLDEALGYGKTLHDA
LAELHQRAIDGVPIKPADADELVDRHLHVPFAYPSLRDTMRASAKRTVEKYIEARQAEFD
KIEFSEKSIEVALEDGINVLGRIDLVRRRDTNAVAIVDLKSTERAQAEELTEAQLHIYAL
GYRELTGKDADFVETYELDTQTRKPRAVDADLIADVVGKVKSAANGLRSNAFPATPNAVQ
CGRCDFSRLCGSCAVGKAAAGAAK
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttacaaccgaacaagcctacgccataggccatgcaggtggaaatctgcaactc
attgcatgcgccggctcaggcaagaccgaagtcgtggcacagcacatcacgcgattgctc
acgccgcaggccgaaggcggcatgggtctgaagcctgccaatatcgtggccttcaccttc
actgaaaaggctgcggctgaactcaagcagcgcgtccttgaccgttgccgcgaacgcctg
cctggcctcacgggcatggcggaaatgtatatcgggaccatccacggctttagccttgac
ctgctccgcaccgaagtgccgcaatatctgaagtatgacgttctcaacgaagtgcagcag
gtgctctttgtcgatcgcaactccgcgaaaagcggcctcaccgccacctcaaccctccag
ggcgcaaaactcaagcgatatgtcgatacgcgcctttacatcgaagccatgtccatcctt
agggaatcggcggtcgattggaaggcgctgaaaggaaccacgattctcgagggctttggg
gcctacacaaccctcctgcacgagcgcgacatgttcgactactccgccatacttcaatgt
gcagtcgaggcgctcgagaaggacgaaaccctgcgcgcccgcatggcgcagcggatcaag
atcatcatcgtcgatgaatatcaggatgtgaacccaatccaggagcgcatcgtccgccag
ctgcatggtcttggcgccgctgtcaaagtggtcggcgacgacgaccagaccatctatcag
tggcgcggcagcgatgtcggcaacatcctgagcttcgctgaccgctatgcgcccgtcagc
accatcaagcttgaagccaatttccgctcgacgcccggcatcaccgacgtggcgcgtctc
gtgatcgagaagaacgcctcccgactcgacaaagccatgcagtccgccgacgcgcagagc
tacgaggcgggcgatatcgtcgccttgcagttcacgtcaccggacgaagaggctgactac
atcgccaagatctgcaaagcgctcaggggcaccatgattgaggagggggcgggcaaacgt
cccatctcctggtcggacatgtcggtcctcgtgcgctacaccaagatgggagcacccatc
cggcgcgctttcgagcgcgagggcattcccttcgtctctgtgggcatggacaccttgttc
gacgccgcggaaggacaagccgcccggctgctcttctactttatggccaaccgcgccacg
caggacgacgttgtgcaggcttggcgcgccgccaatctcggtgtgcctgaaggcatgctc
gatgcggccatcacagcggctgaggccacgcgcgccaaaatggcggtcgaggatcaggat
gtccggttctcggtctacaacatccagcgccagttcatgggattcctcgaggagatcggc
ctcaaggaagagcttgtccctggtggccggggcccgcaggttttctacaacctgggcaag
ttcagccaggccatctcggatttcgagagcatctatttccactcgcggcccctccaaaaa
tacgaatcctttgcgggcttcctcgagcaccaggccgaggatgcctacggccagtccagc
ggcgcggaagacaagttagcgtccttcgacgccgtgcaaatcctgaccatccatcgcgcc
aaggggctgcaatggcccgtggtgtttatcccgcagcttgtccgcaaccagtttccggca
agcccgcgtggcgggcgcaatgtctggcacctcatcccctccgcagccgtcgcagggcaa
gggcggttccggggctcggaagccgatgaacggcgccttttctatgtggcagtaacccgc
agccagaaacaccttcacatgacgaccgcgtcaacccctggcagcaaccgctatgtccat
ccttcggttttctttcacgacgtgctggaatcgaaattcgtgaagcggttgaggcaaagc
tatgacgcgcgcgagcgcggcgacccccgctccaaggcctcgatttccaatgtgaacctg
tccttttcggacatccgctactacttcgagtgcccgtatcagttcaaaatgcgcaccctt
tatgggttcaacgcgcctcttgatgaagcgcttggatacgggaaaactctgcacgatgcc
ctggccgaattgcatcagcgcgcgattgacggcgtgccgatcaagcccgccgacgcggat
gaactcgtggaccgccatctccatgtgcccttcgcctatccaagcctgcgcgacacgatg
cgcgcatcggccaagcgcacggtcgagaaatatatcgaggcccggcaggctgagttcgac
aagatcgagttcagcgaaaaatccattgaagtggcgctcgaggacgggatcaatgttctc
ggtcgtatcgaccttgtccgccgccgcgataccaacgcggttgccatcgtcgatttgaaa
tcgaccgaacgcgcccaagccgaagagctcaccgaagcgcagcttcacatctatgccttg
ggctaccgcgaactgactggcaaagacgcagactttgttgaaacctatgaactcgacacc
cagacgcgaaagccgcgcgcggtcgatgccgatctcattgctgacgttgtcggcaaggtg
aaatctgctgccaacggcctgcgctccaacgcatttcccgcaacgccaaacgccgtccag
tgcgggcgctgtgacttttccaggctctgcgggtcctgcgctgtgggcaaggccgcggcg
ggagccgccaagtga
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