Aquibium oceanicum: BSQ44_12090
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Entry
BSQ44_12090 CDS
T04603
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
meso
Aquibium oceanicum
Pathway
meso03420
Nucleotide excision repair
meso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSQ44_12090
03430 Mismatch repair
BSQ44_12090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meso03400
]
BSQ44_12090
Enzymes [BR:
meso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSQ44_12090
DNA repair and recombination proteins [BR:
meso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BSQ44_12090
MMR (mismatch excision repair)
Other MMR factors
BSQ44_12090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
DUF3553
DUF3638
Motif
Other DBs
NCBI-ProteinID:
APH72023
UniProt:
A0A1L3SRH3
LinkDB
All DBs
Position
2449342..2452074
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AA seq
910 aa
AA seq
DB search
MSDFPDMPFFDEDDGPPRPAAAPAGPSGIAARAMAGRRQQAPDYLSGLNPEQRLAVETTE
GPVLVLAGAGTGKTRVLTTRIAHILATGRAWPSQILAVTFTNKAAREMKQRIGVLVGSAV
EGMPWLGTFHLIGVKILRRHAELAGLRSDFTILDTDDVIRLIKQLIQAEGLDDKRWPARQ
FAQMIDGWKNKGFAPKDIPEGDARAFANGKGRELYTAYQERLKTLNACDFGDLLLHPIRI
LRDHRDVLEEYHRRFKYILVDEYQDTNTAQYMWLRLLAQRPKAGRPISPSGGEIDQTPAS
SRTEGSQGRPAAVLDGAPSRSGDRVSASKPQQINICCVGDDDQSIYGWRGAEVDNILRFD
KDFPGATVIRLERNYRSTAHILGAASHLIAHNEGRLGKTLFTDHPDPEDAKVMVHAAWDS
EEEARAVGEAIEQHQRQGLHLNDMAILVRASFQMREFEDRFVTLGLNYRVIGGPRFYERQ
EIRDAMAYFRVVAQGADDLAFERIVNVPKRGLGEAAIRQIHDAARALRVPMLEAARKLAE
SDEMKPKPRAALREIAANFARWRDALDNTPHTELAETILEESGYTDMWKNDKSAEAPGRL
ENLKELIRSMEEYESLRSFLEHVALVMDAEQDETMDAVSIMTLHSAKGLEFETVFLPGWE
EGLFPHQRALDEGGRSGLEEERRLAYVGLTRAKKNLHIWFVSNRRIHGLWQSTIPSRFLD
ELPEAHVEVAEAGNSYGGYGSGYGGSFGGGSFAGGRGGAGRQNPYGASRFDNLGSSGNQS
AGGARTGSADGGAFSNTYSTPGWARAQKNRTEATDRNWGTRSGHAVERIGYGEPDSGFGA
GAGSVKSRVIEGELVAKSVSDTLSAFQVGDRVFHMKFGNGNVAAVEGNKLTIDFDKAGQK
RVLDGFVKGV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatttccccgacatgccgttcttcgacgaggacgatggtccgccccgcccggcc
gcggcacccgccggtccctccggcatcgccgcgcgtgccatggcgggccgccggcaacag
gcgccggactatctttcgggcctcaaccccgagcagcggcttgcggtggagaccaccgaa
ggtcccgtgctggtgctggccggcgccggcactggcaagacgcgggtgctgacgacccgc
atcgcccacatcctcgccaccggccgcgcctggccgagccagatcctcgccgtcaccttc
acaaacaaggccgcgcgcgagatgaagcagcggatcggcgtgctggtcggctcggcggtc
gagggcatgccctggctcggcaccttccacttgatcggggtcaagatcctgcgccgtcat
gccgagctcgccgggctgcgctccgatttcaccatcctcgacaccgacgacgtcatccgc
ctgatcaagcagctgatccaggccgagggactggacgacaagcgctggccggcgcgccag
ttcgcccagatgatcgacggctggaagaacaagggtttcgcgccgaaggacatccccgaa
ggcgacgcgcgcgccttcgccaacggcaagggccgcgagctctacacggcctaccaggag
cggctgaagacgctcaacgcctgcgacttcggcgacctcctcctccaccccatccgcatc
ctgcgcgaccaccgcgacgtgctggaggagtatcaccgccggttcaaatacatcctggtc
gacgagtaccaggacaccaacaccgcgcagtacatgtggctgaggctcttggcgcagcgg
ccgaaagccgggcggccgatctccccatcagggggggagatcgatcagaccccggcctcc
tcgcgaaccgaaggttcgcaaggccgaccggctgccgtgctcgatggggcgccctcgcga
agcggcgacagggtgagcgcaagcaaaccgcagcagataaatatttgctgcgtcggcgac
gacgaccagtcgatctacggctggcgcggcgcggaagtcgacaacatcctgcgcttcgac
aaggattttccgggcgcgaccgtcatccggctcgagcgcaactaccgctccaccgcgcac
atcctgggtgcggcctcccacctcatcgcccacaacgaaggccggctcggcaagacgctg
ttcaccgaccatcccgaccccgaggacgccaaggtgatggtgcatgccgcctgggactcc
gaggaggaggcccgcgcggtcggcgaggcgatcgagcagcaccagcgccagggcctgcat
ctcaatgacatggcgatcctggtgcgcgcctccttccagatgcgcgagttcgaggaccgc
ttcgtcacgctcggcttgaactaccgcgtcatcggcggcccgcgcttctacgagcggcag
gaaatccgcgacgccatggcctatttccgggtggtggcgcagggcgccgacgacctcgcc
ttcgagcgcatcgtcaacgtgcccaagcgcggcctgggcgaagccgccatccgccagatc
cacgacgccgcccgcgcgctgcgcgtgcccatgctggaagccgcgcgaaagctcgccgag
agcgacgagatgaagcccaagccgcgcgcggcgctccgcgagatcgcggccaatttcgcc
cgctggcgcgacgcgctggacaacaccccgcacaccgaactcgccgagaccattctcgaa
gagagcggctacaccgacatgtggaagaacgacaagtcggccgaggcaccggggcggctc
gaaaacctcaaggagctcatccgctccatggaggaatacgagagcctgcgctccttcctc
gaacacgtcgcgctcgtcatggacgccgagcaggacgagaccatggacgccgtctccatc
atgacgctgcattcggccaaggggctggagttcgagaccgtgttcctgcccggctgggag
gaaggcctcttcccccaccagcgcgcgctcgacgagggcggacgttcggggctggaggag
gagcggcggctggcctatgtggggctcacccgcgccaagaagaacctgcacatctggttc
gtctccaaccgccgcatccacggcctgtggcaatccaccatcccctcacgcttcctcgac
gaactgccggaggcccatgtcgaggtcgccgaagcgggcaattcctacggcggctatggt
tcaggctatggcggctccttcggcggcggctccttcgcgggcggacgcggcggcgcgggc
cggcaaaacccctacggcgcctcgcggttcgacaatctgggctcaagcggcaaccagtcg
gcgggcggcgcgcgcaccggctcagcggacggcggcgccttctccaacacctactccacc
cccggctgggcccgcgcccagaagaaccgcaccgaagccaccgaccgcaactggggcacc
cgctccggccacgcggtggagcgcatcggctacggcgaaccggactccggcttcggcgcc
ggagccggctcggtgaagagccgtgtcatcgaaggcgaactagtggcgaaaagcgtctcc
gacaccctctcggccttccaggtcggcgatcgggtctttcacatgaagttcggcaacggg
aatgtcgcggcggtggagggcaacaagctgacgatcgacttcgacaaggccgggcagaaa
agggtgctggacgggtttgtgaagggggtgtga
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