Aquibium oceanicum: BSQ44_12370
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Entry
BSQ44_12370 CDS
T04603
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
meso
Aquibium oceanicum
Pathway
meso03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSQ44_12370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meso03400
]
BSQ44_12370
Enzymes [BR:
meso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSQ44_12370
DNA repair and recombination proteins [BR:
meso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BSQ44_12370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APH72065
UniProt:
A0A1L3SRW7
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All DBs
Position
2509005..2512508
Genome browser
AA seq
1167 aa
AA seq
DB search
MSLIDSLGLKPGRTGAVTIGGVADGFEAFVLARIAAEAAGDRPVLFVARDGQRIPAIIEA
LGFAAPGLPVLELPAWDCLPYDRVSPGADAAARRLDALSAMIALREKPHRAVVITTVNAV
LQRVPPAALLAAQSFSVRPGNQVDMKALIDRLETNGFDRVGTVRDVGDFAVRGGILDLHA
PGWPEPLRLDFFGDTLESIRAFDAATQRTTGQRKEMSLQPASEVALTPETISRFRRNYIE
AFGAPSRDDALYAAISEGRRFAGMEHWLPFFYDGLETIFDYVPDGPLVFDNLAHESLSER
HTLILDHYEARKRQAEGKGLGDATPYNPTPPDRLYLTPESMVPEAGERLVCDLSPFEAPP
AGGRVILNAKSRAGRSFAAERADPNANVFDHAVKYVAAERGAGRKVLIAAWSEGSLDRLG
QILDEHGLGNMTRVESLADLEKLPAGEAGVAILPVETGFETARLVLLGEQDILGDRLVRR
SKRKRAADFISELSSLAAGDIVVHADHGIGRFIGLKNIEAAGAPHDCLEIHYAGDGRLFL
PVENIELLSRYGSDAADTPLDRLGGGAWQSRKAKLKKRLLEMAGDLIRIAAERQMRGAPA
LVPPEGLYGEFAARFPYEETEDQQTAIDSVIDDLGAGRPMDRLICGDVGFGKTEVALRAA
FLAAMEGLQVAVVVPTTLLARQHFKTFSQRFSGLPIRVRQASRLVGAKELAETKKGIADG
TVDIVVGTHALLGAAISFKSLGLLIIDEEQHFGVKHKERLKDLKSDVHVLTLSATPIPRT
LQLALTGVRELSLITTAPVDRMAVRTFISPFDPLVIRETLLRERYRGGQCFYVVPRISDL
TEVHDFLRESVPELKVAVAHGQLPPGELDDIMNAFYDGSYDVLLSTTIVESGLDIPTANT
LIVHRADMFGLAQLYQLRGRVGRSKARAYALFTLPNNRTLTQTAERRLKVLQSLDTLGAG
FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEIRGTGEVSDGSWSPQIT
VGTAVMIPENYVSDLQLRLALYRRLAELETTEEIDSFGAELIDRFGPLPEEVQHLLKIVF
IKALCRKANVEKLDAGPKGVVIQFRDKTFADPAGLVKMIAEQGSLAKIRPDQSVVFIRDW
PKPEKRLAGAAVVMTQLARLAEKADAA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgagccttatcgattctctcggcctgaagcctggccgcaccggggccgtgacgatcggc
ggcgtcgccgacggcttcgaggccttcgtgctggcgcggatcgccgcggaggcggcgggc
gaccggccggtgttgttcgtcgcgcgcgacggccagcgcatcccggccatcatcgaggcg
ctgggcttcgccgcgcccggtctgccggtgctggaactgcccgcttgggactgccttccc
tatgaccgcgtgtcgcccggcgccgacgccgccgcgcggcggctggatgcgctgtcggcg
atgatcgcgttgcgagagaagccgcaccgggcggtggtgatcacgacggtcaacgcggtg
ctgcagcgcgtgccgccggccgcgctgctggccgcgcagtccttctcggtgcgccccggc
aaccaggtcgacatgaaggcgctgatcgaccggctggagaccaacggcttcgatcgggtc
ggcacggtgcgcgacgtcggcgacttcgccgtacgcggcggtattctcgatctccacgcg
ccgggctggccggagccgctcaggctcgacttcttcggcgacacgctggaatcgatccgc
gccttcgatgcggcaacccagcgcacgacgggccagcgcaaggagatgtcgctccagccg
gcgagcgaggtggcgctgacgcccgagacgatcagccgattccgccgcaactatatcgag
gccttcggagcgccctcgcgcgatgacgcgctttatgccgccatcagcgagggccgccgc
tttgccggcatggagcactggctgcctttcttctacgacggcctcgagacgatcttcgat
tacgtgccggacggtccgctggtcttcgacaatctggcgcacgagtccctgtcggagcgg
cacacgctgatcctcgaccactacgaggcgaggaagcggcaggccgagggcaaggggctg
ggcgacgccacgccctacaatccgacgccgccggaccggctctacctgacccccgaaagc
atggtgccggaagcgggcgagcggctggtctgcgatctctcgccgttcgaggcgccgccg
gccggcggccgggtgatcctcaacgcgaagtcgcgggcggggcgcagcttcgccgccgag
cgcgccgatccgaacgccaacgtcttcgatcatgccgtcaagtatgtcgccgccgagcgc
ggggcgggacgcaaggtgctgatcgccgcgtggagcgaggggtcgctcgaccggctcggc
cagatcctggacgaacacggcctcggcaacatgacgcgggtggagagcctcgccgacctg
gagaagctgccggcgggcgaggcgggtgtggcgattcttcccgtcgagaccggcttcgag
actgcgcggttggtcctgctcggcgagcaggacattctcggcgaccgcctggtcaggcgc
tcaaagcgcaagcgcgccgccgatttcatctcggaactctcgtcgctagcggcgggcgac
atcgtcgtccatgccgaccacggcatcggacgcttcatcggcctgaagaacatcgaggcg
gcgggcgcgccgcacgactgcctggaaatccactatgccggcgacgggcggctgttcctg
ccggtcgaaaacatcgagctcttgtcgcgctacggttcggacgcggccgacacgccgctc
gaccggctgggcggcggcgcttggcagtcgcgcaaggccaagctgaagaagcgcctgctg
gagatggcgggcgacctgatccgcatcgcggcggagcggcagatgcgcggcgcgccggcg
ctggtaccgccggaagggctctacggcgagttcgccgcgcgcttcccctacgaggagacg
gaagaccagcagaccgccatcgattctgtcatcgacgatctcggcgccggacgcccgatg
gaccgcctgatctgcggcgacgtcggcttcggcaagaccgaggtggcgttgcgcgccgcc
ttcctcgccgccatggagggcctacaagttgcagtagtggtgccgacgaccttgctggcg
cgccagcacttcaagacgttctcgcaacgcttctccggcctgccgatccgggtgcggcag
gcctcgcggctggtcggagcaaaggaactggcggagacgaagaagggcatcgccgacgga
acggtggacattgtcgtcggcacccatgcgctgctgggtgcggcgatcagcttcaagagc
ctcggcctgctgatcatcgacgaggagcagcatttcggggtcaagcacaaggagcggctg
aaggacctgaaaagcgacgtgcacgtgctgacgctttccgcgacaccgatcccgcgcacg
ctgcaactggcgctgacgggagtgcgcgaactgtcgctgatcaccaccgcgccggtcgac
cgaatggcggtgcgcaccttcatctcgcccttcgatccattggtcatccgcgagacgctg
cttcgcgagcgataccgcggcgggcagtgcttctacgtcgtgccccgcatcagcgacttg
acggaagtgcatgacttcctgcgtgaatccgtgccggaactgaaggttgccgtggcgcac
ggccagttgccgccaggcgagctcgacgacatcatgaacgccttctatgacggcagctac
gacgtgctcctgtcgacgacgatcgtggaatccgggctagacatcccgaccgccaacacg
ctgatcgtgcaccgcgccgacatgttcggcctggcgcagctctatcagctgcgcggacgc
gtcggccgttccaaggcgcgcgcctacgcgctgttcacgctgcccaacaaccgcaccctg
acccagaccgccgagcggcgcctgaaggtgctccagtcgctcgacacgctcggcgccggc
ttccagctcgccagccacgacctcgacatccgcggcgccggaaacctgctcggcgaggag
cagtcgggccacatcaaggaggtcggcttcgagctctaccagcagatgctggaggaggcg
gtggccgaaatccgcggcaccggcgaggtctccgacggttcatggtcgccgcagatcacg
gtgggcacggcggtcatgatcccggaaaactacgtttccgacctccagctcaggctggcg
ctctaccgccgcctggcggaactggaaacgacggaggagatcgattccttcggtgccgag
ctgatcgaccgtttcggaccgctgccggaagaggtgcagcacctcctcaagatcgtcttc
atcaaggcgctgtgccgcaaggccaacgtggaaaagctcgatgccgggccgaagggcgtg
gtcatccagttccgcgacaagaccttcgccgatccggcgggtctggtgaagatgatcgcc
gaacaggggtcgctggcgaagataaggccagaccagagcgtggtcttcatccgcgactgg
ccgaagccggagaagcggctcgccggtgctgccgtggtgatgacacagctggctcggctg
gcggagaaggcggacgcggcctga
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