Aquibium oceanicum: BSQ44_12415
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Entry
BSQ44_12415 CDS
T04603
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
meso
Aquibium oceanicum
Brite
KEGG Orthology (KO) [BR:
meso00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meso03032
]
BSQ44_12415
03400 DNA repair and recombination proteins [BR:
meso03400
]
BSQ44_12415
Enzymes [BR:
meso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BSQ44_12415
DNA replication proteins [BR:
meso03032
]
Prokaryotic type
DNA Topoisomerases
BSQ44_12415
DNA repair and recombination proteins [BR:
meso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BSQ44_12415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
APH72074
UniProt:
A0A1L3SRP6
LinkDB
All DBs
Position
complement(2520321..2522930)
Genome browser
AA seq
869 aa
AA seq
DB search
MDVVVVESPAKAKTINKYLGRNYKVLASFGHVRDLPSKDGSVRPDEDFSMSWEVDGPSSK
RLAEITKAVRDADGLILATDPDREGEAISWHVLEVLRQKKALKDKPVRRVVFNAITKQSV
LDAMANPRDIDGPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR
EAEIERFVREEYWQIAALLKTPRNDDFEARLTEYDGKKLQKLDIKNRQQADSIKAMLEGA
AFKVLSVEAKPTKRNPGPPFTTSTLQQAASSRLGFSASRTMQVAQRLYEGIDIGGETAGL
ITYMRTDGVQMAPEAIAGARETIGKEFGDRYLPEKPRQYTAKAKNAQEAHEAIRPTDFSR
LPSEMRQYLDADQAKLYDLIWKRAISSQMQPAEIERTTVEIEAANGQKKAALRAVGSVVR
FDGFIAAYTDQKEEDAEDEDARRLPEIRSGESLKRETIDATQHTTEPPPRYSEASLIKRM
EELGIGRPSTYAATLKTLEDREYVKIDKRRLIPEAKGRLVTAFLESFFERYVEYDFTASL
EEKLDEISDGKLAWKEVLRDFWKQFSASVDDIKELRVGDVLEALNLTLAPLVFPAREDGT
DPRSCPKCGSGQLSLKLGRYGAFVGCSNYPECGYTRQLGDDNAEGSAETADRDLGVDPHT
GEAITLKNGRFGPYVQRGDGKDAKRSSLPKGWAPETIDHEKAMALLSLPRDVGKHPETGK
MISAGIGRYGPFLLHDGAYANLESVEDVFSVGINRAVSTIAEKAASRGAGRRGGTPAALK
ELGEHPDGGGKITVREGRYGPYVNHGKINATLPKGKEPMSVTVEEALALIAEKAGKSGGK
KAPAKKSAAKKTTAKKTAKKTATASKKKE
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgtcgtcgtcgaatcccccgcgaaagcgaagaccatcaacaagtatctgggc
cgaaactacaaggttttggcctcattcgggcatgtccgcgacctgccgtcgaaggacggg
tcggtgcggcccgacgaggatttttccatgtcctgggaggtcgatggtccctcctccaag
cgtcttgccgagatcacaaaggcggtgcgtgacgccgatggtctgatcctcgccaccgat
ccggatcgcgagggcgaagcgatctcctggcacgtgctcgaggtgctgcggcagaagaag
gcgttgaaggacaagccggtgcggcgcgtcgtcttcaatgccatcaccaagcagtcggtg
ctcgacgcgatggccaatccgcgcgacatcgatgggccgcttgtcgatgcttacctcgcc
cgtcgggcgctcgactatctcgtcggtttcaccctttctcccgtcctgtggcgcaagctg
ccgggcgcccggtcggccggccgcgtccagtcggtcgcgctgcggctggtctgcgaccgc
gaggccgagatcgagcgcttcgtccgcgaagaatattggcagatcgccgccctcctgaag
accccgcggaacgacgacttcgaggcccggctcacggagtacgacggcaagaagctccag
aagctcgacatcaagaaccgccagcaggccgactccatcaaggcgatgctcgagggcgcg
gccttcaaggtcctgtccgtcgaggcgaagccgaccaagcgcaatccgggtccgcccttc
accacctcgacgctgcagcaggccgcctcctcgcggctcggcttctcggcctcgcgcacc
atgcaggtggcgcagcgtctctacgagggcatcgacatcggcggcgagaccgccggcctc
atcacctacatgcgaaccgacggtgtccagatggcgccggaggcaattgccggcgcacgc
gagaccatcggcaaggagttcggcgaccgctacctacccgagaaaccgcgccagtacacc
gccaaggccaagaacgcgcaggaagcgcacgaggctatccgcccgacggacttctcccgg
ttgccgtccgagatgcgccagtatctcgacgcagaccaggccaagctctatgacctgatt
tggaagcgcgccatctccagccagatgcagccggccgagatcgagcgcaccaccgtggag
atcgaggccgccaacgggcagaagaaggcggcactgagggcagtcggctcggtggttcgt
ttcgacggcttcatcgccgcctataccgatcagaaggaagaggacgccgaggacgaggac
gcccgccgcctgccggagatccgctccggcgagagcctgaagcgcgagacgatcgacgcc
acccagcacaccaccgagccgccgccgcgctattcggaagcatcgctgatcaagcgcatg
gaagagctcggcatcggccgcccctccacctatgccgcgacgctgaagacgctagaggac
cgcgaatacgtcaaaatcgacaagcgcaggctgatccccgaagccaagggacgcctcgtg
acggcgttcctggaaagcttcttcgagcgctacgtcgaatacgacttcaccgcctcgctc
gaagagaagctcgacgagatctcggacggcaagctcgcctggaaggaggtcctgcgcgac
ttctggaagcagttttccgcctcggtcgacgacatcaaggaactgcgcgtcggcgacgtg
ctggaggcgctgaacctgacgctcgcaccgttggtgttcccggctcgcgaggacgggacc
gatccgcgctcctgcccgaagtgcggttccggccagctgtcgctgaagctcggccgctac
ggcgccttcgtcggctgctcgaactaccccgaatgcggctacacccgccagctcggggac
gacaatgccgagggctccgccgagaccgccgatcgtgacctcggcgtcgatccgcatacg
ggcgaggcgatcacactcaagaacggccgcttcggcccctacgtgcagcgtggcgatggc
aaggacgccaagcgttcgagcctacccaaggggtgggctccggagacgatcgatcacgag
aaagcgatggcgctcctgtcgctgccgcgcgatgtcggtaagcatcccgagaccggcaag
atgatctcggcgggcatcggccgctacggcccgttcctgctgcacgacggcgcctatgcc
aacctcgaaagcgtcgaggatgtattttcggtcggcatcaatcgcgcggtctccacgatc
gccgagaaggccgcgtcgcggggtgctggacgccgtggcggaacgccggccgccctgaaa
gagttgggggagcatcccgacggcggcggcaagatcacggtccgcgaaggccgctacggc
ccctatgtcaaccacggcaagatcaacgcgacgctgcccaagggcaaggagcctatgtcg
gtcaccgtcgaggaagcgctagcgctgatcgccgagaaggcgggcaagtcgggcggcaaa
aaggctcctgccaagaagtcggcagcgaagaagaccactgcgaagaagacggcaaagaag
acggcgaccgcttcgaagaagaaagagtga
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