Mesorhizobium sp. Pch-S: C1M53_11260
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Entry
C1M53_11260 CDS
T05918
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
mesp
Mesorhizobium sp. Pch-S
Brite
KEGG Orthology (KO) [BR:
mesp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesp03019
]
C1M53_11260 (hrpB)
Enzymes [BR:
mesp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C1M53_11260 (hrpB)
Messenger RNA biogenesis [BR:
mesp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C1M53_11260 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
AAA_30
ResIII
wHTH-PRTase_assc
AAA_19
Cas3-like_C_2
AAA_25
nSTAND3
AAA_22
AAA_16
PP_kinase_C
Motif
Other DBs
NCBI-ProteinID:
QAZ43460
UniProt:
A0A4P6H8K7
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All DBs
Position
2448249..2450708
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AA seq
819 aa
AA seq
DB search
MRPPRLPDLPVTAVLPALAAALDSGNSVVLVAPPGAGKTTLVPLALLDASWLGSGKIVLL
EPRRLAARAAARRMATLLGEEPGGTVGYAMRMENRTSARTRILVVTEGVLARMILDDPEL
PGVSAVIFDEFHERSLDGDFGLALALDVQGALRPDLRLLVMSATLDGARVAKLLSDAPVI
ESEGRSFPVEIRYDERPSGMPVEEAMAKAVRTALADEPGSVLAFLPGQREIERTAAHLEG
RVGADTDVVPLYGQLDGKAQDAAIRPAAEGRRKVVLATAIAETSITIDGVRVVIDSGLSR
LPKYEPASGLTRLETVRASRASAEQRAGRAGRTQPGVAIRLWRAEQTAALPAFTPPEILE
ADLSGLMLDCAAFGVANPASLCFLDAPPAPALSEARALLKALHAIDDAGRLTDAGSAMRK
LALPVRLAHMVAEAADHGRAADAARLAVLLTERGLGGDSADLERRLMRFSSDRSPRANAA
RQLADRLARAVSSAAPEATSTGALLLNAWPDRVAKARGERGRFVLANGSGAMLDAADALA
GETFLVVADLQGRAQNARITAAAPVSEPEIRAALSDCIETRRETSFDRERRSVRVRETVR
LGAIVLAERMLPAPAGADADNAVIEAIREHGLALLPWSREAESLRNRLAWLHRGLGAPWP
DMSDDALTERLDDWLAPFLTGEASLNAISGGTLTSGLIALVPHDLQRRIDALAPTHFDAP
SGSHVPVRYDGEAPVLAIRVQELFGLDRHPSIANGTVPLTLELLSPAHRPIQTTRDLPGF
WRGSWADVRSDMRGRYPKHVWPENPLEAAATSRAKPRGT
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccgccacgcctgcctgatctgcccgttaccgccgtattgcctgcgctggctgcg
gcgctggacagtggcaacagcgtcgtgctggtcgcaccgccgggagcaggcaagacgacg
ctggtaccgctcgccctgctcgatgcctcctggttgggctccggaaagatcgtgctgctc
gaaccgcgccggcttgccgcccgcgcggccgccaggcgcatggccaccctgctcggcgag
gagcccggcggcacggttggctacgccatgcgcatggagaaccgtacttcggccaggaca
cgcatcctggtcgtcaccgaaggcgttctggcgcgcatgatcctcgatgacccggagctg
ccgggcgtgtcggcggtgatcttcgacgaatttcacgaacgctcgctggatggcgatttc
ggactggcgctggccctcgatgtgcaaggcgcgctgcggccggacctgcgccttctggtg
atgtcggcgacactcgatggcgcccgtgtggcgaaacttctgtccgatgcccctgtcatc
gaaagcgagggccgcagcttccccgtcgagatccgctatgacgagcgcccctccggcatg
cctgtcgaagaagcgatggccaaggcggtgcgaacggcactggcggatgaacccggcagc
gtcctcgccttcctgcccggacagcgcgagatcgagcgcacggcggcacatctcgaaggt
cgcgttggcgccgacaccgatgtcgttcccctgtacggccaactcgacggcaaggcgcag
gacgcagccatccgcccggcagcggaaggtcggcgcaaggttgtgctggcgaccgcgatc
gccgaaacctcgatcaccatcgacggcgtgcgcgtcgtcatcgattccgggctgtcgcga
ctgccgaaatatgaaccggcgagcggcctgacgcggttggaaacagtgcgcgcctcgcgc
gcctccgccgaacagcgagccggccgcgccgggcgcacccagccgggcgttgccatccgg
ctctggcgcgccgaacagaccgcagcactgccagccttcaccccgcccgagattctcgaa
gccgatctttccgggctgatgctggactgcgccgctttcggcgtcgcgaatcctgccagc
ctttgcttcctggatgccccgccagcgcccgcattgtccgaagcgcgcgccctgctgaag
gccttgcatgcgatcgacgacgccggacgactgaccgacgctggttccgccatgcgcaag
ctcgcgctgccggtgcggctggcccatatggtggccgaggcggccgaccacggccgtgca
gcagacgcggcacggctggcggtgcttctgaccgagcgtggactgggtggcgacagcgcc
gacctggaacggcggctgatgcgtttttcttcagatcgttcgccccgcgccaacgccgcg
cggcaattggccgacaggctggcgcgcgctgtttcttccgcggcgcccgaagcgaccagc
acgggggcgcttcttctcaatgcctggcccgaccgtgtcgccaaggcgcgtggcgagcgc
gggcgttttgtgctcgccaatgggtccggcgcgatgctggatgcggccgatgcgctcgcc
ggcgagacatttctggtcgtcgccgacctgcagggcagggcgcagaacgcccgcatcacc
gcagcagcaccggtgagcgagccggaaatccgcgcagcgctttccgactgcatcgagaca
cgccgcgaaaccagtttcgatcgcgaaaggcgctcggtgcgcgtgcgcgagacggtccgc
ctcggcgccatcgtgctggccgaacggatgctgcctgctccggcgggagcggatgcagac
aatgccgtgatcgaagcgatccgcgaacacggccttgccctgctgccatggagcagggaa
gcggaaagcctgcgcaaccgccttgcctggctgcatcgcggccttggtgcgccatggccc
gacatgagcgacgatgcgttgaccgagcggctcgacgactggctggcgcccttcctgacc
ggcgaggcctcactcaacgccatctcgggcggcacattgacaagtggcctgatcgcgctg
gtaccacatgaccttcagcgcaggatcgacgcgctcgccccgacccatttcgacgcaccg
tccggcagccatgtgcctgtgcgctatgatggtgaagcacccgtgctggccattcgcgtg
caggagctgttcggccttgatcgccatccgtcaatcgccaacggcaccgtgccactgacc
ctggaactgctgtcgcctgcgcatcggccaatccagacgacacgtgacctgcccggcttc
tggcgtggctcctgggccgacgtgcgctccgacatgcgcggccgctatccgaaacatgtc
tggccggaaaatccgctcgaggccgcggccaccagccgcgccaagccacgcggcacctga
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