Mesorhizobium sp. Pch-S: C1M53_28265
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Entry
C1M53_28265 CDS
T05918
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mesp
Mesorhizobium sp. Pch-S
Pathway
mesp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1M53_28265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesp03019
]
C1M53_28265
Enzymes [BR:
mesp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1M53_28265
Messenger RNA biogenesis [BR:
mesp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1M53_28265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QAZ46240
UniProt:
A0A4P6HFJ0
LinkDB
All DBs
Position
complement(5971065..5972603)
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AA seq
512 aa
AA seq
DB search
MTEEINAEPTGFAKLGISGQLLKATVLAGFTEPKPIQEQAIPAQLAGRDILGIAQTGSGK
TAAFALPILSRIIALGTKRRPKTARALILAPTRELAVQIEETIKVLAKGAHISTALVLGG
VSRFSQVKKIGPGVDFLIATPGRLMDLVREKDVILSETTWLVLDEADRMLDMGFINDVKR
IAKATHPARQTALFSATMPAEIEQLTQSLLRDPVRVEVAPQGTTAAEIVQSVVLARTKQK
RKVLSDMLADEAMSSVIVFARTKHGADRVTKDLERDGFEAAVIHGNKSQNARQKALNGFR
DGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGRDGIAITLVDPS
ENSKLRQVERIIRMKLPVIADHLGQPDPVREPRPQGERNFAPANDGAREDRGQRRDGRPR
NDGFGKKRFGGKPQGGRPFSGKSDGEHSAQGERNQGGDRPFKAKPSGERHFHGKPKGDRP
FGDKPHGERKPEGGKPFRNKRRFNRKPAARAA
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgaagaaatcaacgcagagccgaccggttttgccaaactcggaatttccggccag
ctcctgaaagccaccgttctggcgggcttcacggaaccgaagccgattcaggagcaagcc
atccccgcacagcttgcgggccgcgatatcctgggtatcgcccagaccggctccggcaag
accgctgcttttgccctgccaatcctgtcgcgcatcatcgcgctcggcaccaagcgccgg
ccgaagacggcacgcgccctgatcctggcaccgacccgcgagctggccgtccagatcgaa
gagacgatcaaggtgctcgcaaaaggcgcgcacatctccaccgcacttgtgctggggggc
gtttcgcgcttcagccaggtcaagaagatcggtccaggcgtggatttcctgatcgcgacg
cccggccgcctgatggatctggtgcgcgagaaggacgtcatcctgtcggagaccacctgg
ctggtgctcgacgaagccgaccgcatgctcgacatgggcttcatcaacgacgtcaagcgc
atcgccaaggccacacacccggcgcggcagaccgcgctgttctcggccaccatgccggcc
gaaatcgaacagctgacacaaagcctgctgcgcgatccggtccgagtggaagtggcgccg
cagggcaccacggccgccgagatcgtgcagagcgtcgtgctcgcccgcaccaagcagaag
cgcaaggttctttcggacatgctggccgacgaggccatgagctcggtgatcgtgttcgca
cgcaccaagcacggtgccgatcgagtcaccaaggatctcgagcgggacggcttcgaggct
gccgtcatccacggcaacaagagccagaacgcccgccagaaagctttgaacgggttccgc
gacggctcggttcgcattctggtcgccaccgacatcgccgcgcgcggcatcgacgtgccc
ggcatcagccatgtcgttaatttcgacctgccggatgaagccgaaagctacgttcaccgc
atcggccgcaccggtcgcaatggccgcgacggcatcgccatcacgttggtcgatccgtcc
gagaacagcaagctgcgccaggtcgaacgcatcatccgcatgaagttgccggtgatcgcc
gaccatctcggccagcccgatccggtccgcgagccgcgtccgcagggtgagcgcaatttt
gccccggcaaacgatggcgcgcgtgaggatcgtggccagcgccgtgacggccggccgcgc
aatgacggcttcggcaagaagcgttttggcggcaagccgcagggtggtcgcccgttttcc
ggcaagtcggatggcgaacacagcgcccagggtgaacgcaaccagggtggcgatcgtccc
ttcaaggccaagccgagtggcgagcgccacttccacggcaagcccaagggcgaccgtccg
tttggcgacaagccgcatggcgagcgcaaaccggagggcggcaagccgttccgcaacaag
cgccgcttcaatcgcaagccggctgcgcgggccgcttga
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