Mesorhizobium sp. Pch-S: C1M53_29990
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Entry
C1M53_29990 CDS
T05918
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mesp
Mesorhizobium sp. Pch-S
Pathway
mesp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mesp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C1M53_29990 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesp03021
]
C1M53_29990 (rpoC)
03400 DNA repair and recombination proteins [BR:
mesp03400
]
C1M53_29990 (rpoC)
Enzymes [BR:
mesp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C1M53_29990 (rpoC)
Transcription machinery [BR:
mesp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C1M53_29990 (rpoC)
DNA repair and recombination proteins [BR:
mesp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C1M53_29990 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
XM1_gp53_minor_capsid
ApbA_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QAZ46528
LinkDB
All DBs
Position
complement(6314174..6318370)
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVMNLFNPQAPAQVFDSIRISLASPDKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDSFTA
MIGAEAIHDLLAGMELEKIAGDLRSELASTTSELKQKKLLKRLKVVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPASGAPIIVPSQDMVLGLYYLSIVNQNEPGEGMAFADMGELQHALE
TKAVTLHAKIKGRFRTVDAEGNVVSKIYDTTPGRMILGELLPKNVNVPFETANQEMTKKN
ISKMIDTVYRHCGQKETVIFCDRIMALGFAHACRAGISFGKDDMLIPDTKEKLVAETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCSEKVADEMMGRIKAVEFDPSGRQKPMNSIYM
MSHSGARGSPTQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVNSVDCGTEKGLTMQPIVDAGQIVASIGQRVLGRTA
LDDINHPVTGDLLVKAGTMMDERDVEQIEKAGVQSVRIRSALTCEVRIGVCAVCYGRDLA
RGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDSSYLEASYEGTVSVRNRSV
VRNSDGNLVVMGRNMAILILDETGKERATHRVTYGSRIYVDDGDKVKRGQRIAEWDPYTR
PILTEIEGRVAFEDLVDGISVQETADESTGITKREVIDWRSTPRGSDLKPAIVVQDAKGK
VGKLSKGGDARFLLSVEAILSVEPGSTVKPGDVLARIPMESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTVRFGRDYKNKRRIIIEPHDSTLEPVEYLIPKGKPFHLQDGDVIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVTINDKHIEVIVRQMLQKVEI
TEQGDSTYIPGDHVDVIELDEINERLIEEGKKPAAGQPVLLGITKASLQTPSFISAASFQ
ETTRVLTEAAVAGKTDMLQGLKENVIVGRLIPAGTGGQMSQIRRIATHRDELILDERRKT
SGVEVAEPMLTEMVTAAQ
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatctcttcaatccgcaggcgcccgcgcaggtgttcgattcc
attcgcatctcgctggcgtcgcctgacaagattctgtcctggtcgttcggtgagatcaag
aagccggagacgatcaactaccgcacgttcaagcccgagcgtgacggtctgttctgcgcg
cgcatctttggtccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgaaaagtgcggcgtggaagtcacgctgtcgcgcgttcgccgc
gagcgcatgggccacatcgagctcgccgctccggtcgctcacatctggttcctgaagtcg
cttccgtcgcgcatcggcacgctgctcgacatgacgctgaaggatatcgagcgcgtcctc
tacttcgagaactacatcgtcaccgagccgggcctcaccgcgctgaaggagcatcagctt
ctcagcgaggaggagtacatgctggccgtcgacgagtacggcgaagattccttcaccgcg
atgatcggcgccgaggccatccatgaccttctcgccggcatggaactggagaagatcgcg
ggcgacctgcgttcggaactcgcttccacgacgtcggagctgaagcagaagaagctcttg
aagcgcctcaaggtggtcgagaacttcatggaatccggcaatcgtccggaatggatgatc
atgaaggtcgtccccgtcatcccgccggacctgcgcccgctggttccgctggacggcggc
cgttttgcgacgtccgacctgaacgatctctatcgccgcgttatcaaccgtaacaaccgt
ctgaagcgcctcatcgagctgcgcgcgcccggcatcatcgtgcgcaacgaaaagcgcatg
ctgcaggaagccgtcgacgcactgttcgacaacggtcgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggtcgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgctcggtcatcgtgaccggt
ccggagctgaagctgcatcagtgcggcctgccgaagaagatggcgctggagctgttcaag
cccttcatctacgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggcaaag
aagctggtcgagaaggagcgtccggaagtctgggatatcctcgacgaggtcatccgcgaa
catccggtgctgctcaaccgcgcgccgacgcttcaccgcctcggcatccaggcgttcgag
cccaccctgatcgaaggcaaggcgatccagcttcacccgctggtctgcacggccttcaac
gccgacttcgacggtgaccagatggcggtccacgtgccgctgtcgctggaagcgcagctt
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcacccggcctccggcgcaccg
atcatcgtgccgtcgcaggacatggttctgggcctctactatctctcgatcgtcaaccag
aacgaaccgggagagggcatggctttcgccgacatgggcgaactgcagcatgcgctggag
accaaggccgttaccctgcacgccaagatcaagggccgcttccggaccgttgatgcggaa
ggcaatgtcgtgtcgaagatctacgacaccacgcccggccgcatgatcctcggcgaactg
ctgccgaagaacgtcaacgtgccgttcgagaccgccaaccaggagatgaccaagaagaac
atctccaagatgatcgacacggtctaccgccattgcggtcagaaagagacggtcatcttc
tgcgatcgtatcatggccctcggcttcgcccatgcctgccgcgccggtatttcgttcggc
aaggacgacatgctgatcccggacaccaaggagaagctggttgccgagaccgaggctttg
gccaaggaatacgagcagcagtacaatgacggcctgatcacccagggcgagaagtacaac
aaggtcgtcgacgcctgggccaagtgctcggaaaaggtcgccgacgaaatgatgggccgc
atcaaggcggtcgagttcgatccgagcggccgtcagaagccgatgaactcgatctacatg
atgtcgcattcgggtgcgcgtggctcgcccacccagatgcgtcagctcgccggtatgcgc
ggcctgatggccaagccgtcgggtgaaatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgacggttctggagtacttcaactccacgcacggcgcccgcaagggtctggct
gacaccgctctgaagaccgcgaactcgggttacctgacccgtcgtctggtcgacgtggcg
caggactgcatcgtcaactccgtggattgcggcaccgaaaagggcctcaccatgcagccg
atcgtcgatgcgggccagatcgtcgcgtccatcggccagcgcgtgctgggtcgtacggca
ctcgacgacatcaaccatccggtcaccggcgatctgctggtcaaggctggcacgatgatg
gacgagcgcgatgtcgagcagatcgagaaggcaggcgtacagtcggtccgcatccgctcg
gcgctgacctgtgaagtccgcatcggcgtctgcgcggtctgctacggtcgcgatcttgcc
cgcggtactccggtcaaccagggcgaggctgtcggcgtcatcgccgcacagtcgatcggc
gagccgggcacgcagctcaccatgcgtaccttccacatgggcggcaccgcccaggtggtt
gactcctcctatctcgaggcgtcgtatgaaggcaccgtgtctgttcgcaaccgcagcgtt
gtccgcaactccgatggcaacctcgtggtgatgggccgcaacatggcgatcctgatcctt
gacgaaaccggcaaggagcgtgccacgcaccgggtcacctatggttcgcgcatctacgtg
gacgacggtgacaaggtgaagcgcggccagcgtatcgccgagtgggatccgtacacccgt
ccgatcctcaccgaaatcgagggtcgcgtggcgttcgaagatctggtcgatggcatttcc
gttcaggagactgccgatgagtcgaccggtatcaccaagcgcgaggtcatcgactggcgg
tccacgccgcgtggttcggacctcaagccggcgatcgtcgtccaggacgccaagggcaag
gtcggcaagctgtcgaagggtggcgatgcccgcttcctgctctcggtcgaggcaatcctc
tcggtcgagccgggttcgacggtcaagccgggcgacgtgctcgctcgtatcccgatggaa
agcgccaagaccaaggacatcaccggcggtctgccgcgcgtggccgaactgttcgaggct
cgccgtccgaaggatcacgccatcatcgccgagatcgatggtacggtccgcttcggccgc
gactacaagaacaagcgccgcatcatcatcgagccgcatgactcgacgctggagccggtc
gaatacctgatcccgaagggcaagccgttccatctccaggatggcgacgtcatcgagaag
ggcgactacatcctcgacggcaatcctgcgccgcacgacatcctggcgatcaagggcgtg
gaggctctggcctcctacctcgtcaacgaaatccaggaagtctaccggttgcagggcgtg
acgatcaacgacaagcacatcgaagtgatcgtccgtcagatgctgcagaaggtggaaatc
accgaacagggcgactcgacctatatcccgggcgaccatgtcgacgtgatcgagctggac
gagatcaacgagcgcttgatcgaggaaggcaagaagccagcggccggccagccggtgctg
ctcggcatcaccaaggcctcgctgcagacgccgtccttcatctcggccgcctccttccag
gagacgacccgcgtgctgacggaagctgccgttgccggcaagaccgacatgctgcagggc
ctgaaggaaaacgtcatcgtcggccgtctgatcccggccggtaccggtggccagatgagc
cagatccgtcgcattgcgacgcatcgcgacgagctcatcctcgacgagcgtcgcaagacg
tccggcgttgaagtggccgagccgatgctgaccgaaatggtcaccgccgcgcagtaa
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integrated database retrieval system
