Mesorhizobium sp. Pch-S: C1M53_30160
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Entry
C1M53_30160 CDS
T05918
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mesp
Mesorhizobium sp. Pch-S
Pathway
mesp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1M53_30160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesp03019
]
C1M53_30160
03009 Ribosome biogenesis [BR:
mesp03009
]
C1M53_30160
Enzymes [BR:
mesp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C1M53_30160
Messenger RNA biogenesis [BR:
mesp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1M53_30160
Ribosome biogenesis [BR:
mesp03009
]
Prokaryotic type
rRNA processing factors
C1M53_30160
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QAZ46556
LinkDB
All DBs
Position
6349519..6352338
Genome browser
AA seq
939 aa
AA seq
DB search
MPNKMLIDASHPEETRVVVVRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEHEDEEDEENGENGDDRQERNRGRR
GRRRGRNRDRGERKRDAAASENDETSDEAVAADENADDVETVEPNDSGDADEGAKGGSIA
ASVEVDVISEEVDVAQESREEQPHAPEDNHGDEVAPAADADRGTLEEVPSSHSDDHEIES
VGAEDALEEIRDRRRPVRKQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYS
VLMPNTARGGGISRKITNAQDRKRLKEVVADLEVPQGMGVILRTAGESRTKAEIKRDYEY
LMRLWENVRNLTLKSTAPALVYEEGSLIKRSVRDLYNKEIDEILVAGEDGYREAKDFMRM
LMPSHAKMVQPYRDTSPIFARNGIEAQLDKMLQPQVTLKSGGYLIINQTEALVSIDVNSG
RSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVIDFIDMEENRNNRAVEKKLKDCL
KNDRARIQVGRISHFGLMEMSRQRIRASVLESTMKPCPHCGGTGHVRSDSSVALLVVRAI
EEFLLKDSRSHITVRTPAATALYVLNHKRSTLVELETRFGLTITVEADETVGSQHYTIAR
GAIAEKPEGFVEMKPQPIPVEPEEPEDEIIVEDEEEAGEDQPRQEQQQAREGDSQRDRKR
RRRRRRRGGRDRDQAATEAGNDEDTAADDEDASEESDAAVVEAAAEVETIVVAEENDDEP
AKKRRRGKRGGKRSRKEDGETADDAAEAATADSETVTAEVVAEAAVVEPEPAPAVEEAPA
EKPKKPRRTAKSKKAEAAAAEAAVVEVTTETAADIVVEPAPSEAKDAPAGKKPRASRRKV
ASAETPAAPVVSSTTAAEAEEAVEEKPKRGGWWQRKGFF
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgctaatcgacgcctcccacccggaggaaacacgcgtagtcgtcgtt
cgcggtaaccgcatcgaagaattcgacttcgaatcgcaagacaagaagcagctcaaagga
aacatctaccttgcccgcgtcacgcgggttgagccgtcgctgcaggcagcgttcgtggaa
tatggcggcaaccgccatggtttcctggctttcagcgaaattcatcccgattactaccag
atacctgttgctgatcgtcaggcgctgttgcgcgccgaggctcaggaacatgaggacgag
gaagacgaggaaaacggcgagaatggcgatgatcgccaggagcgcaatcgcggacggcgt
ggccgtcgtcgcggacgcaatcgcgaccgtggcgagcgcaagcgtgatgctgcggccagc
gaaaacgatgaaacgagcgatgaggccgtagcggccgacgaaaatgccgatgatgtcgaa
accgtcgagccgaacgacagcggcgatgccgacgaaggcgccaaaggcggttcgattgct
gccagcgtcgaagtcgatgtgatttcggaagaagtggacgttgcgcaggaaagccgtgaa
gaacagccgcacgcccccgaggacaatcatggcgacgaagtcgcgcctgccgcggacgcc
gaccgtggcacgctggaagaagtcccctcctcccattccgacgaccacgagatcgagtca
gtcggcgccgaggacgcgcttgaggagatccgcgatcgtcgcaggccggtacgcaagcag
tacaagatccaggaagtcatcaagcgtcgccagatcctgctggttcaggtcgtcaaggaa
gaacgcggcaacaagggcgccgctctgaccacctacctgtcgctggccggacgttattcc
gtcctgatgccgaacaccgcccgcggtggcggcatctcgcgcaagatcaccaacgcccag
gaccgcaagcgtctcaaggaagtggtcgccgacctcgaagtgccgcagggcatgggtgtg
atcctgcgcaccgccggcgaaagccgaaccaaggccgaaatcaagcgtgactacgaatac
ctcatgcggttgtgggagaacgtccgcaatttgacgctcaagtccaccgcgcccgcgctg
gtctatgaggaaggatcgctgatcaagcgctcggtgcgcgatctctacaacaaggagatc
gacgagatccttgttgcaggcgaagacgggtatcgcgaggcgaaggacttcatgcgcatg
ctgatgcccagccatgccaagatggtccagccctaccgcgacacctcgccgatcttcgcg
cgcaacggcatcgaggcgcagctcgacaagatgctgcagccgcaggtgacgctgaagagc
ggcggctacctgatcatcaaccagacagaggccttggtttcgatcgacgtcaactcgggc
cgctcgacgcgtgagcactcgatcgaagacaccgcactgcagaccaatctcgaagccgct
gaagaagtggcccgacagttgcgactgcgtgaccttgccggcctgatcgtcatcgacttc
atcgacatggaggagaaccggaacaaccgggctgtcgagaagaagctcaaggattgcctg
aagaacgatcgtgcgcgcatccaggtcggccgcatttcgcatttcggcctgatggagatg
agccgccagcgtattcgcgccagcgtgctggaatcgaccatgaagccttgcccgcattgt
ggcggcaccggccatgttcgctccgattcctccgtcgcgctgcttgtcgtgcgtgccatc
gaggagttcctgctcaaggattcgcgcagccacatcaccgtgcgcaccccggcagcgacc
gcgctttacgtgctcaaccacaagcgctccacactggtcgagctggaaacacgcttcggc
ctgacgattaccgtcgaggcagatgagactgtcggttcgcagcactacacgatcgcgcgt
ggtgcgatcgcagagaagccggaaggcttcgtcgagatgaagccgcagccgatcccggtc
gaacccgaagagccggaagacgagatcatcgtcgaggacgaggaagaggccggagaagat
cagcctcgccaggaacagcagcaggcacgcgagggcgacagccagcgcgaccgcaagcgt
cgtcggcgcaggcgccgtcgcggcggccgcgatcgcgatcaggcggccacggaagcaggc
aacgatgaagatactgccgcagacgacgaggacgccagcgaagagagtgatgccgctgtc
gttgaagccgccgcagaggtcgagacgatcgttgtcgcggaagagaacgacgacgaaccg
gccaagaagcggcgacgcggcaagcgtggcggcaagcgcagccgcaaggaagacggcgag
actgccgacgatgcggcagaggctgccacggccgacagcgaaaccgtgaccgcagaggtc
gtcgccgaagctgcggtggtcgagccggaacccgcgcctgccgtggaagaagctccggcc
gaaaagccgaaaaagccgcgccgtacggcaaagtcgaagaaggccgaagctgccgcagcc
gaggcagcagtcgtggaggtcacgaccgagacggccgcagacatcgtcgtcgagccggct
ccgtccgaagccaaggatgctcccgccggcaagaaaccacgcgcgtcgcgtcgcaaggtc
gcaagcgcggagacgccggccgcacctgtcgtttcttccaccaccgcagcagaagctgaa
gaagcagttgaagaaaagccgaagcgtggcggctggtggcagcgcaagggtttcttctga
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