Mesoflavibacter sp. HG96: C7H62_0039
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Entry
C7H62_0039 CDS
T06472
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mesq
Mesoflavibacter sp. HG96
Pathway
mesq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7H62_0039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesq03019
]
C7H62_0039
03400 DNA repair and recombination proteins [BR:
mesq03400
]
C7H62_0039
Enzymes [BR:
mesq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C7H62_0039
Messenger RNA biogenesis [BR:
mesq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C7H62_0039
DNA repair and recombination proteins [BR:
mesq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C7H62_0039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
TrmB
Motif
Other DBs
NCBI-ProteinID:
QIJ87849
UniProt:
A0A6G7RQK9
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All DBs
Position
30940..32844
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AA seq
634 aa
AA seq
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MQHPINILERYWKFTSFRPLQEDIINAVLNGEDTFALLPTGGGKSICFQVPALAKDGICI
VISPLVALMKDQVRALQNKGIKALALTSGINTKDLDTVLDNCIYGNYKFLYLSPERLQQE
LVQDRIRQMNVNLIAVDEAHCISQWGNDFRPAYKNINILRQLQPTVNVIALTASATPKVK
EDIVKELDFISPKIFEQTFYRPNIAYMVFEEEDKHFRLKAILNKNKQSSIIYVRNRKATI
EICQFLEQENISCTYYHGGLNNTEKDLHLTQWINNQKQVMVATNAFGMGIDKPDVKTVIH
LNLPDSIENYFQEAGRAGRDSKKAYAVILKNKNDKAILEKQFISILPTVDVVKTIYRKLS
NYFQISYGEGSFQTFQFNFNHFCSVYKFNALVAYNALQILDRTSIITLTKQFNNQTEVQF
ILPNQALFNYLEKHKSLAIVVKSILRTYGGIFDHVTKINTSIIANKANVSLQQIYAILNQ
LEQDHVITLNVIKTDAQITFIEPREDDKTINRISKTIKQQHLLKVNQVKAVLNYVDNNNV
CKSKQLLEYFGEKNLKDCGICSVCIKSKNKTTTLDQKQLKTQIITLLEHSAKGSRELFEL
IKTDENSINNCLKELLEQEIITITNTNTYKLKHL
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgcaacatccaataaacatattagagcgttattggaaatttacatcgtttagaccttta
caagaagatataataaacgctgttttaaatggcgaagatacatttgctttattaccaact
ggtggcggaaaaagtatttgttttcaagttcctgctttagctaaagatggtatttgcata
gtaatttcgcctttagttgctttaatgaaagatcaagttagagccttacaaaacaaaggt
attaaagcgctggctttaactagtggaattaataccaaagatctagatactgttttagac
aactgtatttatggcaactacaagtttttatacttatcaccagaacgattacagcaagag
cttgtacaagatagaattaggcaaatgaatgttaatcttattgctgtagatgaagcacat
tgcataagccaatggggaaacgattttagaccagcctataaaaacataaatatattaagg
cagttacaacctactgtaaatgttattgcattaacagcaagtgcaacacctaaagtaaaa
gaggatattgttaaggagttagactttattagtcctaaaattttcgagcagactttttac
agaccaaatattgcatatatggtttttgaagaagaagacaagcactttagattaaaggct
attttaaataagaacaaacaatcttctataatatatgtaagaaatagaaaagcaactata
gagatttgtcagtttttagaacaagaaaacattagttgcacctattatcatggtggatta
aataacaccgaaaaagatttacatctaacccaatggattaataatcaaaaacaagtaatg
gttgctaccaatgcttttggtatgggaattgataaaccagatgtaaaaaccgttattcac
ttaaatctgccggatagcatagaaaattattttcaagaagctggtcgtgcaggaagagat
agcaaaaaagcctatgcagtaattttaaaaaataaaaatgataaagctattcttgaaaag
caatttatttcaattttaccaacagtagatgttgttaaaaccatttacaggaagttgagt
aactattttcaaatttcttatggagaaggcagttttcaaacatttcaatttaactttaat
catttttgttctgtatataaatttaatgctttagttgcttataatgcattgcaaatttta
gatagaacaagtataattacgcttactaaacaatttaataatcaaacagaagttcaattt
atattaccaaatcaagcgttatttaattatttagaaaaacataaatccttagcaattgtt
gttaaatctattttaaggacttatggtggtatttttgatcatgtaacaaaaataaataca
tctattatagctaataaagctaatgttagcctacaacagatatatgctatattaaatcaa
ttagaacaagatcatgttattaccctaaatgttataaaaacagatgcgcaaatcacgttt
atagaaccaagggaagatgataaaactataaacagaatttctaaaacaattaaacaacaa
catttactaaaagtaaatcaagtaaaagctgtacttaattatgtagacaataataacgtt
tgtaaaagcaaacaactgttagaatattttggagaaaaaaatcttaaagattgtgggata
tgttctgtatgtataaagtccaaaaacaaaacaactacattagatcaaaaacagttaaaa
acccaaattattacactattagaacatagtgcaaaaggaagccgagaattattcgaatta
attaaaacagacgaaaactctattaacaattgcctaaaagagcttttagaacaagaaata
atcactataacaaataccaacacatataaattaaaacatttataa
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