Mesoflavibacter sp. HG96: C7H62_0063
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Entry
C7H62_0063 CDS
T06472
Name
(GenBank) DEAD-box ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mesq
Mesoflavibacter sp. HG96
Pathway
mesq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7H62_0063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesq03019
]
C7H62_0063
03009 Ribosome biogenesis [BR:
mesq03009
]
C7H62_0063
Enzymes [BR:
mesq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C7H62_0063
Messenger RNA biogenesis [BR:
mesq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C7H62_0063
Ribosome biogenesis [BR:
mesq03009
]
Prokaryotic type
rRNA helicases
C7H62_0063
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Helicase_helical
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIJ87873
LinkDB
All DBs
Position
59130..60923
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AA seq
597 aa
AA seq
DB search
MSTFQQLGLDADLLQAINDLGFETPSEVQQKAIPILLESDRDLVALAQTGTGKTAAFGFP
MLQKIDPSSRTTQGLILSPTRELCLQITNEMKLYGKYLNGLNVTAIYGGSSITEQAKQVK
RGAQIIVATPGRMKDMISRKLVDISKIEYAVLDEADEMLNMGFYEDINDILANTPIDKST
WLFSATMPKEVAKIAKDFMSDPLEVTVGNKNESTTNVSHEYYLVNSRDRYLALKRLADAN
PDIFSVVFCRTKRDTQKVAEKLIEDGYNAGALHGDLSQNQRDLVMKSFRNNQIQMLVATD
VAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRKIKSIERI
IKRQFDKKELPSGIEICEVQLMSLANKVHNTEINHEIDAYLPSINEIFEDTSKDELIKKF
FSVEFSRFFNYYKNSKNLNVEASSSDSNRGESSGNSTRYFINVGRKDGYDWMKLKDYLKE
VLQLGRDDVFKVDVKDSFSFFNTEKEHQDKVLEFFTDYKENGRFINVEITEDRGRRDRKR
GDRNRRDGGNRRRRNDNNNSEKRSRRSNDSAPKKGRRSDRDKSEFKSTHGRPRRSRR
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgagcacattccaacaacttggacttgatgcagatttgctacaagccattaacgactta
ggttttgaaacaccaagtgaagtacaacaaaaagcaattcctattttattagaaagcgat
cgtgacttagtcgcgttagcacaaacaggaacaggtaaaactgctgcttttggttttcct
atgttacaaaaaatagatcctagtagtcgtacaacacaaggattaatcttatcacctact
agagaactttgtcttcaaatcactaacgagatgaagctatacggtaaatacctaaacgga
cttaacgttactgcaatttacggtggatcaagcattacagaacaggcaaaacaagtaaaa
cgtggtgcgcaaattattgttgcaacaccaggtagaatgaaggatatgataagccgtaaa
ctagtagatatttctaaaattgaatacgcggttttagatgaagcagatgaaatgcttaac
atgggattttatgaagatattaatgatatattagctaacacaccaatagataaaagtact
tggttatttagtgctacaatgccaaaggaagtcgctaaaatagcaaaagactttatgtca
gatcctttagaagttactgtaggtaataaaaacgaaagtactactaacgtatcacatgag
tattacttagttaactctagagatcgttatttagctttaaaacgtttagcagatgcaaat
ccagatattttttcggtagtattttgtcgtacaaaacgagacactcaaaaagttgccgaa
aaacttattgaagatggatacaacgctggcgcattacatggagacttaagccaaaaccaa
cgtgatttggtaatgaagtcttttagaaacaatcaaatacaaatgcttgtagcaacagat
gttgctgcacgtggtatagatgtagatgatgttacacacgtaataaactaccaattacca
gacgaaatcgaaacctacacacaccgttctggtcgtactggtcgtgctggtaaaacagga
gtttctatggtaatagtttctaaaagtgaggtaagaaaaattaaaagtatagagcgtatt
ataaaacgccaatttgataaaaaagaattaccaagcggaatagaaatttgtgaagtacaa
cttatgtctttagctaataaagtacataataccgaaattaatcacgaaatagacgcatat
ttacctagcataaacgaaatttttgaagatacatctaaggacgaattaattaaaaaattc
ttctctgtagaattctcaagatttttcaattactacaaaaactcaaaaaacttaaatgta
gaagctagtagcagcgatagtaatcgtggtgaatcaagtggtaattctactagatacttt
ataaacgttggtcgtaaagatggttacgactggatgaaattaaaagactatttaaaagaa
gtattacaattaggtcgcgacgatgtatttaaagtagatgtaaaagatagtttttcattt
tttaatacagaaaaagagcaccaagataaagtcttagaattctttacagattacaaagaa
aacggtcgatttattaatgttgaaattactgaagatcgcggaagaagagatcgcaaaaga
ggcgatagaaaccgtcgtgatggaggcaatagaagacgaagaaacgacaataataattct
gaaaaacgctctagacgtagtaacgatagtgcgcctaaaaaaggaagacgatcagaccgc
gataaatctgaatttaaatctactcacggtagaccaagacgttctagacgttaa
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