Mesoflavibacter sp. HG96: C7H62_1147
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Entry
C7H62_1147 CDS
T06472
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mesq
Mesoflavibacter sp. HG96
Brite
KEGG Orthology (KO) [BR:
mesq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mesq03016
]
C7H62_1147
Enzymes [BR:
mesq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C7H62_1147
Transfer RNA biogenesis [BR:
mesq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C7H62_1147
Prokaryotic type
tRNA splicing ligases
C7H62_1147
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIJ88956
LinkDB
All DBs
Position
complement(1247189..1248580)
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AA seq
463 aa
AA seq
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MGKKLSGKDLIKLGFPKNNSINVTLGQINRYQKRVKKEKILIEAKKVLLNPEAYKGDGVW
GKIAESLLDPVNVTKQKLNTHRAPFQIYGENEIDDQAKYQLFDALKLPISVAGALMPDAH
VGYGLPIGGVLATKNAVIPYGVGVDIGCRMCLTIYPVKVSYLKGKKHQLENILLEHTKFG
MYETHKIKHDDPIFERDEFKTIPLVKRLKDKAYKQLGTSGGGNHFVEFGVISILDINNEW
DLPLGDYLGVLSHSGSRGLGANIAKRYTYLATKQCPLPKHVQHLAWLDLNTHDGQEYWLA
MNLAGDYARACHDNIHKRISKLLGEKPIVKIDNHHNFAWKQEVNGEECIVHRKGATPAKK
GELGIIPGSMTAPGFIVRGLGNTKSLQSASHGAGRVLSRRQCKTTLTQSAIKKELQNHDV
SLIGGGIDEAPMAYKNIETVMKNQQELVEVIGKFTPKIVRMDR
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaaattaagtggaaaagacctaatcaaattaggctttcccaaaaataacagt
attaatgtgactttaggtcagattaatcgctatcaaaaacgagtaaaaaaagagaaaata
ttaattgaagcaaaaaaagtattactaaatcctgaagcatataaaggagatggcgtttgg
gggaaaatagctgaaagtctattagatccagtaaatgtgacaaaacaaaaacttaataca
catcgcgcaccttttcaaatttatggagaaaatgaaattgatgaccaagctaagtatcaa
ttattcgatgctttaaaattaccaatttctgtagctggagctttaatgccagatgcacac
gttggttacggattaccaattggaggtgtgttagccactaaaaacgcggtaataccgtat
ggagttggtgtagatattggatgcagaatgtgtttaactatatatcctgttaaggtatct
tacttaaaaggtaaaaagcatcaattggaaaacatcttgttagaacacactaaatttggt
atgtacgaaacgcataaaataaaacacgatgatccaatttttgaacgtgatgagtttaag
accattccactagtaaagcgattaaaagataaagcttacaaacaattaggcacatcaggt
ggaggaaatcactttgtagaatttggagtcattagtatactagatataaataatgaatgg
gatttaccattgggtgattatttaggcgttttatcacatagcggttcgcgtggattaggt
gcaaacattgcaaaacgctatacgtatttagcaacaaaacaatgtcctttaccaaaacac
gtacaacatttagcctggctagatttaaatactcatgatggtcaagagtattggttagct
atgaatttagcaggtgattatgccagagcttgtcatgataatatccataaacgtataagt
aaactcttaggtgaaaaacctattgtaaaaatagataatcatcacaattttgcttggaaa
caagaagtaaacggtgaagaatgtatcgtgcacagaaaaggagcaacacctgcaaaaaaa
ggagagttaggtattattcctggatctatgactgcgcctggatttatagtaagaggatta
ggtaacactaaaagtttacaatcggcatctcacggagctggacgcgtattgtccagacgc
caatgtaaaacaacattaacacaaagcgctattaaaaaagagctacaaaatcatgatgtt
tcactaattggtggcggtattgacgaagcgcctatggcatacaaaaacatagaaactgta
atgaaaaatcaacaagaattagttgaagtcatagggaaatttacaccaaaaatcgtgaga
atggatagataa
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