Mesoflavibacter sp. HG96: C7H62_1874
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Entry
C7H62_1874 CDS
T06472
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mesq
Mesoflavibacter sp. HG96
Pathway
mesq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7H62_1874
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesq03019
]
C7H62_1874
Enzymes [BR:
mesq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C7H62_1874
Messenger RNA biogenesis [BR:
mesq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C7H62_1874
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
AAA_22
Cas3-like_C_2
NAT10_TcmA_helicase
AAA_30
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QIJ89683
LinkDB
All DBs
Position
complement(2092727..2093965)
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AA seq
412 aa
AA seq
DB search
MSFKDLQLNKPLRRAVADAGYDNPTLVQEKAIPAILDKKDVIVSAQTGTGKTAAFALPIL
QLLFDKQDAPKRGKKIKALIVSPTRELAVQIAKNFETYSTYTNLRTTVVFGGTSVEPQKD
ILNKGVDILIATPGRLLDLHKQTALHLDQVEVLVLDEADLMLDMGFIDDVRKIERLCPTE
KQTLLFSATIPHKVENLAKTILNNPECILVAPNASTSKNIEQLLYYVPKRNKIELCLHLL
RNTIKGHIIIFRRTKFGVSKLEQTLLKNGYKVDSIHGDKSQSARQQALNNFTNKEVNILI
ATDVAARGIDIDSLDAVINFDLPNIPETYVHRIGRTARAGQTGIAYSFCSADEKSYIKTI
QQLISLQLDVIDDHPYPLDPKAKPIVHTSNKKSKHKKGRKGKGSKQKKKRWY
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaagacttacaattaaacaaacctttacgtcgtgctgttgcagatgctggt
tacgacaaccctactttggtacaagaaaaagcaattcctgctattttagataaaaaagac
gttattgtttctgcgcaaacaggtaccggtaaaactgcagcatttgcattaccaatttta
caattactttttgacaaacaagatgcaccaaaacgcggtaaaaaaattaaagcacttatt
gtaagtccaacacgcgaattagcagtacaaatcgctaaaaacttcgaaacctattctact
tacactaatcttagaacaactgtggtttttggtggtacatctgtagagcctcaaaaagac
atacttaataaaggcgtagatattttaattgctacacctggtagattgttagatttacac
aagcaaacagctttacatttagatcaagttgaagttttggttttagatgaagccgattta
atgctagatatgggatttattgatgatgtaagaaaaattgaacgcttatgtcctaccgaa
aaacaaacacttttattttcggcaacaatacctcataaggttgaaaatttagcaaaaacc
attttaaataatccagaatgtattttggttgcgcctaatgcatctacctctaaaaatatt
gagcagttattatattatgtaccaaaacgtaataaaatagaattgtgtttacacttacta
cgtaacactataaaaggacatattatcatttttagacgtaccaaatttggcgttagtaaa
ttagaacaaacactattaaaaaacggatataaagtagatagtatacatggtgacaaaagt
caaagtgcaagacagcaagccttaaataatttcactaataaagaagtcaatattttaata
gcaacagatgttgcagcacgtggtatagatatagacagtttggatgcagtaatcaatttt
gatttaccaaatataccagaaacttatgtccatagaattggtcgtacagcacgtgctggt
caaactggtatagcttattcattttgtagtgcagacgaaaaatcttatattaaaaccatc
caacaattaattagtttacaacttgatgttattgacgatcatccatatcctttagaccca
aaagcaaaacctattgtgcatacgtctaataaaaaaagtaagcacaaaaaaggacgaaaa
ggaaaaggtagtaaacaaaagaaaaaacgctggtattaa
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