Mesorhizobium sp. 8: FGU64_01225
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Entry
FGU64_01225 CDS
T07809
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mesr
Mesorhizobium sp. 8
Pathway
mesr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mesr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FGU64_01225 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesr03021
]
FGU64_01225 (rpoC)
03400 DNA repair and recombination proteins [BR:
mesr03400
]
FGU64_01225 (rpoC)
Enzymes [BR:
mesr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FGU64_01225 (rpoC)
Transcription machinery [BR:
mesr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FGU64_01225 (rpoC)
DNA repair and recombination proteins [BR:
mesr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FGU64_01225 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
XM1_gp53_minor_capsid
RnfC_N
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QDB99139
LinkDB
All DBs
Position
238220..242416
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVMNLFNPQAPAQVFDSIRISLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTDLKLHQLLSEEEYMLAVDQYGEDSFTA
MIGAEAIHDLLAGMDLENIAGELRTELASTTSELKQKKYLKRLKVVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPASGAPIIVPSQDMVLGLYYLSIVNQNEPGEGMAFADMGELQHALE
TGAVTLHAKIKGRYKGVDKDGNEVSKIYDTTPGRLIISELLPKNVNVPFETANQEMTKKN
ISKMIDTVYRHCGQKETVIFCDRIMALGFAHACRAGISFGKDDMVIPDTKAKLVADTEAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCSEKVADEMMGRIKAVEFDKDGRQKPMNSIYM
MSHSGARGSPTQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMQPIVDAGQIVASVGQRVLGRTA
LDDINHPVSGDLLVKAGKLMDERDVELIEKAGIQSVRIRSALTCEVRVGVCAVCYGRDLA
RGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDSSFLEASYEGTVQIRNRNV
VRNSEGHLVVMGRNMAVLILDETGKERATHRVTYGSRIFVDDGDKVKRGQRIAEWDPYTR
PVLTEIEGRVAFEDLVDGISVQETADESTGITKREVIDWRSTPRGSDLKPAIVVQDAKGK
VGKLSKGGDARFLLSVEAILSVEPGAQVKPGDVLARIPMESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTIRFGRDYKNKRRIIIEPHDSALEPVEYLIPKGKPFHLQDGDVIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVEI
TEQGDSTYIPGDHVDVIELDEINERLIEEGKQPAAGQPVLLGITKASLQTPSFISAASFQ
ETTRVLTEAAVAGKTDMLQGLKENVIVGRLIPAGTGGQMSAIRRIATHRDELILDERRKA
SGVEVAEPMLADMTSAAE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatctcttcaacccgcaggcgcctgcgcaggtgttcgattcg
atccgcatctcgctggcgtcgccggaaaagatcctgtcctggtcgttcggcgagatcaag
aagccggagaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcg
cgcatttttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcgtcatctgcgagaagtgcggcgtggaggtcacgctgtcgcgcgtgcgccgc
gagcgcatgggacacatcgagctcgccgctccggtcgcccacatctggttcctgaagtcg
ctgccgagccgcatcggcacgctgctcgacatgaccctgaaggacatcgagcgcgtcctc
tacttcgagaactacatcgtcaccgagcccggcctcaccgacctgaagctgcaccagctt
ctgtcggaggaggagtacatgctggccgtcgaccagtacggcgaggattcgttcaccgcc
atgatcggcgccgaggccattcatgacctgcttgcaggcatggacctggagaacatcgcc
ggcgaactgcgcaccgagcttgcctccaccacgtcggagctgaagcagaagaagtatctc
aagcgcctcaaggtggtcgagaacttcatggaatcgggcaaccgtccggaatggatgatc
atgaaggtcgtcccggtcatcccgccggacctgcgcccgctggtcccgctggacggcggc
cgcttcgccacctccgacctgaacgacctctatcgccgcgtcatcaaccgtaataaccgc
ctgaagcgcctgatcgagcttcgcgcgccgggcatcatcgtgcgcaacgaaaagcgcatg
ctgcaggaggcggtcgacgccctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgcccgctgaagtcgctgtccgatatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtcaccggc
ccggagctgaagctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaag
cccttcatctacgcccgcctcgacgccaagggttactcctcgaccgtcaagcaggcgaag
aagctggtcgagaaggagcgtccggaggtctgggatattctcgacgaggtcatccgcgag
catccggttctcctgaaccgcgcgccgacgctgcaccgcctcggcatccaggcgttcgag
ccgaccctgatcgagggcaaggcgatccagcttcacccgctggtctgcaccgccttcaac
gccgacttcgacggcgaccagatggcggtccacgtgccgctgtcgctggaagcgcagctc
gaagcccgcgtcttgatgatgtcgaccaacaacatcctgcacccggcctccggcgcgccg
atcatcgtgccgtcgcaggacatggtgctgggtctgtactacctgtcgatcgtcaaccag
aacgagccgggcgagggcatggccttcgccgacatgggcgagctccagcatgcgcttgag
accggcgccgtgaccctgcacgccaagatcaagggccgctacaagggcgtcgacaaggac
ggcaacgaagtgtcgaagatctacgacaccacgcccggtcgcctgatcatcagcgagctt
ctgccgaagaacgtcaacgtgccgttcgagaccgccaaccaggagatgaccaagaagaac
atctccaagatgatcgacaccgtctaccgccactgcggccagaaggagacggtcatcttc
tgcgatcgcatcatggctctcggcttcgcccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattccggacaccaaggccaagctggtcgccgacaccgaggctttg
gccaaggaatacgagcagcagtacaacgacggcctgattacccagggcgagaagtacaac
aaggtcgtcgacgcctgggccaagtgctcggagaaggtcgccgacgagatgatgggccgc
atcaaggcggtcgagttcgacaaggacggccgccagaagccgatgaactcgatctacatg
atgtcgcactccggcgcgcgtggttcgcccacgcagatgcgtcagcttgccggcatgcgc
ggcctgatggcgaagcctagcggcgagatcatcgagacgccgatcatctccaacttcaag
gaaggcctcaccgttctggagtacttcaactccacccacggcgcccgcaagggcctggcc
gacaccgccttgaagacggcgaactcgggctacctgacgcgtcgtctggtcgacgtggcg
caggactgcatcgtcaactcggtcgactgcggcaccgacaagggcctgaccatgcagccg
atcgtcgatgccggccagatcgtcgcttcggtcggccagcgcgtcctcggccgcaccgcg
ctcgacgacatcaaccatccggtttccggcgacctgctggtcaaggccggcaagctgatg
gacgagcgcgacgtggagctgatcgagaaggcgggcatccagtccgtgcgcatccgctcg
gcgctcacctgcgaagtcagggtcggtgtctgcgcggtctgctacggacgcgacctcgct
cgcggcacgcccgtcaaccagggcgaggccgtcggcgtcatcgcggcgcagtcgatcggc
gagccgggcacccagctcaccatgcgtaccttccacatgggcggtaccgcgcaggtggtg
gactcgtccttcctcgaagcctcgtacgagggcacggtgcagatccgcaaccgcaacgtc
gtgcgcaactccgagggccatctcgtggtgatgggccgcaatatggcggtgctgatcctc
gacgagacgggcaaggagcgcgccacgcaccgcgttacctacggttcgcgcatcttcgtg
gacgacggcgacaaggtgaagcgcggccagcgcatcgccgagtgggacccctatacccgc
ccggtgctgaccgagattgagggccgcgtggcgttcgaggatctggtcgacggcatctct
gtgcaggagacggccgacgagtcgaccggcatcaccaagcgcgaggtcatcgactggcgt
tcgaccccgcgcggttcggacctcaagccggcgatcgtcgtgcaggacgccaagggcaag
gtcggcaagctgtcgaagggcggcgacgcccgcttcctgctctcggtcgaggccatcctt
tcggtcgagccgggcgcccaagtcaagccgggtgacgtgctggcgcgtatcccgatggaa
agcgccaagaccaaggacatcaccggcggtctgccgcgcgttgcggaactgttcgaggct
cgtcgtccgaaggaccacgccatcatcgccgagatcgatggcacgatccgcttcggccgc
gactacaagaacaagcgccgcatcatcatcgagccgcatgactcggcgctggagccggtc
gagtacctgatcccgaagggcaagccgttccatctccaggacggcgacgtcatcgagaag
ggcgactacatcctcgacggcaatccggcgccgcacgacatcctggcgatcaagggcgtg
gaagcgctggcttcctacctcgtcaacgagatccaggaggtctaccggttgcagggcgtg
tcgatcaacgacaagcacatcgaggtgatcgtgcgccagatgctgcagaaggtggagatc
accgagcagggcgactcgacctacatcccgggcgaccatgtcgacgtgatcgagctggac
gagatcaacgaacggctgatcgaggagggcaagcagcccgccgccggccagccggtcctg
ctcggcatcaccaaggcctcgctgcagacgccgtccttcatctcggccgcctccttccag
gagacgacccgcgtgctgacggaagcggcggttgccggcaagaccgacatgctgcagggc
ctgaaggaaaacgtcatcgtcggccgcctgatcccggccggcaccggcgggcagatgagc
gcgatccggcgcatcgccacgcatcgcgacgagctcatcctcgacgagcgccgcaaggcg
tccggcgtggaagtggccgagccgatgctggccgacatgaccagcgccgccgaataa
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integrated database retrieval system
