Mesorhizobium sp. 8: FGU64_01895
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Entry
FGU64_01895 CDS
T07809
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mesr
Mesorhizobium sp. 8
Pathway
mesr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGU64_01895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesr03019
]
FGU64_01895
03009 Ribosome biogenesis [BR:
mesr03009
]
FGU64_01895
Enzymes [BR:
mesr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FGU64_01895
Messenger RNA biogenesis [BR:
mesr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FGU64_01895
Ribosome biogenesis [BR:
mesr03009
]
Prokaryotic type
rRNA processing factors
FGU64_01895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QDB99267
LinkDB
All DBs
Position
complement(357612..360440)
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AA seq
942 aa
AA seq
DB search
MPNKMLIDASHPEETRVVVVRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEAEDEDNDENGESEERHDRNRGRRG
RRRGRNRHNGEARHAAEGDDSAPAENGAGDHDTSGEDGAVEVDNAAETSDAGEETVEVSE
TAVLDEETNTTIAAAADAHVISEEVATEEAPESTEDRGTVEEVHHDAHGDDHEVESVGAE
DALEEVRNRRKPVRRQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMP
NTARGGGISRKITNVQDRKRLKEVVADLEVPQGMGVILRTAGESRTKAEIKRDYEYLMRL
WENVRSLTLESTAPALVYEEGSLIKRSVRDLYNKDIDEILVSGEEGYREAKDFMRMLMPS
HAKMVQPYRDTTPIFARAGIEAQLDKMVQPQVTLKSGGYLIINQTEALVAIDVNSGRSTK
EHNIEDTALQTNLEAAEEAARQLRLRDLAGLIVIDFIDMEENRNNRAVEKKLKDCLKNDR
ARIQVGRISHFGLMEMSRQRIRASVLESTMKPCPHCGGTGHVRSDSSTALLVVRAIEEFL
LKDSRSHITVKTPVATALYVLNHKRSTLVDLEQRFGLTITIEADDTVGVQHYLIVRGALA
EKPEGFVENKAPQPALVEEEPEDDIVVEAEDEAEDEQPPQQADTQHGHDGESGDGQRKRK
RRRRRRGGRDREQGAAQQDEAVAAAHDGEAESTETSADSEAGEATVAAEASAAEEAEGKK
RRRGKRGGKRNRRDDTDEAVASAGETAAETMEAPEVAETVSAEVAQPAAVEEAAPVAEVT
EEAKPKKPRRSTRAKKADAAPAETEAASEPAAVETAPPVADKPAEDKPKARSSRRKPAAA
EVAAAPVVVSSTPASEDATAVEDKPAEDKPKRAGWWQRKSFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaaaatgctgatagatgcctcccacccggaggaaacacgcgtcgttgtcgtt
cgcggtaaccgcatcgaagaattcgatttcgaatcccaggacaagaaacagctcaaagga
aacatctacctcgcccgcgtgacgcgggtggaaccttccctgcaagctgcgttcgtcgaa
tatggcgggaaccggcacggcttcctcgccttcagtgaaatccatcccgactattaccag
atcccggtcgccgaccgtcaggcgctgctgcgcgccgaagcgcaggaagccgaagacgag
gacaacgacgagaacggcgagagcgaggagcggcacgaccgcaatcgcggccggcgcgga
cgccggcgcggccgcaaccgccacaatggcgaggcccgtcatgccgccgagggcgacgac
agcgcgcccgccgaaaacggcgccggcgatcatgacacctcgggcgaagacggcgcggtc
gaggtcgataacgcggcagagacaagcgatgccggcgaggaaaccgtcgaggtttcggaa
acggcggtcctcgacgaggaaaccaataccaccatcgcggcggccgccgatgcgcatgtg
atctcggaagaggtcgcgaccgaggaagcgccggaaagcacggaagatcgcggcacggtc
gaggaagtgcaccacgacgcccacggtgacgatcatgaggtcgagtcggtcggcgccgag
gacgcgctggaggaagtgcgcaaccgccgcaagccggtgcgccggcaatacaagatccag
gaagtcatcaagcgccgccagatcctgctggtgcaggtggtcaaggaagagcgcggcaac
aagggcgcggcgcttaccacctatctgtcgctggccggccgctattcggtgctgatgccg
aacaccgcgcgcggcggcggcatctcgcgcaagatcaccaacgtgcaggaccgcaagcgg
ctgaaggaagtggtcgccgacctggaggtgccgcagggcatgggcgtcatcctccgcacc
gccggcgagagccgcaccaaggccgagatcaagcgcgactacgaatacctgatgcggctg
tgggagaacgtccgcagcctgacgctggaatcgacggcccctgccctcgtctacgaggaa
ggttcgctgatcaagcgttcggtgcgcgacctctacaacaaggacatcgacgaaatcctg
gtctccggcgaggaaggctatcgcgaggccaaggacttcatgcgcatgctgatgcccagc
catgccaagatggtccagccttatcgcgacaccacgccgatcttcgcgcgcgccggcatc
gaggcgcagctcgacaagatggtgcagccgcaggtgacgctgaagtccggcggctacctc
atcatcaaccagaccgaagcgctcgtcgccatcgacgtcaattcgggccgctccaccaag
gagcacaacatcgaggacaccgcactccagaccaacctggaagcggccgaggaagcggcg
cgccagcttcgcctgcgcgaccttgcgggcctgatcgtcatcgacttcatcgacatggag
gagaaccgcaacaaccgtgcggtcgaaaagaagctcaaggattgcctgaagaacgaccgt
gcccgcatccaggtcggccgcatctcgcatttcggcctgatggagatgagccgccagcgc
atccgcgcctcggtgctggaatcgaccatgaagccctgcccgcattgcggcggcaccggt
catgtgcgttccgattcctccacggcgctgctggtggtccgcgccatcgaggaattcctg
ctcaaggattcgcgcagccacatcaccgtcaagacgcctgtggccaccgcgctctacgtg
ctcaaccacaagcgctcgacgctggttgacctcgagcagcgcttcggcctgacgatcacc
atcgaggcggacgatacggtcggcgtgcagcactacctgatcgtgcgcggcgcgctggcc
gaaaagccggaaggctttgtggagaacaaggcgccgcagccggctctcgtcgaggaagaa
ccggaagacgatatcgtcgtcgaggccgaggacgaggcggaagacgaacagccgccccag
caggccgacactcagcatggtcatgacggcgagagcggcgacggccagcgcaagcgcaag
cgtcgccggcgtcggcgcggcgggcgcgaccgcgagcaaggcgctgcccagcaggacgag
gctgtcgcggcagcgcatgacggcgaagccgagtcgacagagaccagcgccgacagcgaa
gcgggcgaggccaccgtcgccgccgaggcatccgctgccgaggaggccgaaggcaagaag
cgccggcgcggcaagcgcggcggcaagcgcaaccgccgcgacgacaccgacgaagcagtc
gcttctgccggcgaaaccgcagccgaaacgatggaggcccccgaagtcgccgagaccgtc
agcgccgaggtcgcacagccggcagcggtcgaggaggcagcgccagttgccgaggtgacg
gaggaagccaagccgaagaagccgcgccgcagcacccgcgccaagaaagcggacgccgcc
ccggcagaaaccgaagcggccagcgaaccggcagccgtcgagacggctcccccggtcgcg
gataagcccgctgaagacaagcccaaggcccggtcgtcgcgccgcaagccggcagcagcc
gaagttgcggctgcgccggtcgtggtctcgtcaacgcctgccagcgaagacgctacggcc
gtcgaagacaaaccggcggaagacaagccgaagcgcgccggctggtggcaacggaaaagc
ttcttctaa
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