Mesorhizobium sp. 8: FGU64_06830
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Entry
FGU64_06830 CDS
T07809
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mesr
Mesorhizobium sp. 8
Pathway
mesr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mesr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FGU64_06830 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesr03021
]
FGU64_06830 (rpoD)
Transcription machinery [BR:
mesr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FGU64_06830 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF3106
Imm3
DUF4351
Motif
Other DBs
NCBI-ProteinID:
QDC00159
LinkDB
All DBs
Position
complement(1449828..1451861)
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AA seq
677 aa
AA seq
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MATKEKEEVENEREATSDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQ
IEDTMAMLSDMGINVVEDDEQAEEAEGGDTQADAEEDANEIAEQTGTAVAAPAKKEPTDR
TDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELNE
AKILLREIIDLEATYAGPEAKQAPVVERVDEDAKPKQDEPRGAARRARGEEEDDITNVGG
ESRVEDDEEDEDEANLSLAAMEAELRPQVMETLDVIADTYKKLRKLQDQQVENRLAAAGT
LSPSQDRRLKELKDQLIKAVKSLSLNQARIEALVEQLYDINKRLVQNEGKLLRLAESYGV
RRDEFLREYQGSELDPNWTRSIANLTSRGWKEFTRNEKDTIRDIRGEIQNLATETAISIL
EFRKIVNQVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGR
EPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKGAILPIDAAI
QANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALR
KLKHPSRSRKLRSFLDS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaaggaaaaggaagaggtcgagaacgaacgcgaggccacgagcgacggcccg
ctgctcgacctttccgacgatgccgtcaagaagatgatcaaggccgccaagaagcgcggc
tatgtcacgatggacgaattgaactcggtgctgccgtcggaggaagtgacctccgagcag
atcgaggacacgatggcgatgctctccgacatgggcatcaacgtcgtcgaggacgacgag
caggccgaggaggccgagggcggcgacactcaggcggacgccgaggaggacgccaacgag
atcgccgagcagaccggcacggcggtcgcggccccggccaagaaggaaccgaccgaccgc
accgacgatccggtgcgcatgtatctgcgcgaaatgggctcggtcgagctcctgtcgcgc
gagggcgaaatcgccatcgccaagcgcatcgaggccggccgcgagacgatgatcgcgggc
ctgtgcgaatcgccgctgaccttccaggccatcatcatctggcgcgacgaactcaacgaa
gccaagatcctgctgcgcgagatcatcgacctcgaagccacctatgccggccccgaggcc
aagcaggcaccggtggtcgagcgtgtcgacgaagacgccaagccgaagcaggacgagccg
cgcggagcggcccgccgtgctcgcggtgaagaggaagacgacatcaccaatgtcggcggc
gaaagccgcgtcgaggacgacgaggaagacgaggacgaggcgaacctgtcgctggcggcg
atggaggccgagcttcgcccgcaggtgatggagacgctggacgtcatcgccgatacctac
aagaagctgcgcaagctgcaggaccagcaggtcgaaaaccggctggccgccgccggcacg
ctgtcacccagccaggaccggcgcctgaaggagttgaaggaccagctcatcaaggcggtg
aagtcgctgtcgctcaatcaggcgcgcatcgaggcgctggtcgagcagctctacgacatc
aacaagcggctggtgcagaacgagggcaagctcttgcgcctcgccgaaagctacggcgtg
cgccgcgacgagttcctgcgggaataccaagggtccgaactggacccgaactggacgcgc
tcgatcgccaacctgacctcgcgcggctggaaggaattcacgcgcaacgagaaggacacg
atccgcgacattcgcggcgagatccagaacctcgccaccgagacggccatttcgatcctg
gaattccgcaagatcgtcaaccaggtgcagaaaggcgagcgcgaggccgccatcgccaag
aaggagatggtggaagcgaacctgcgcctcgtcatctccatcgccaagaagtacaccaac
cgtggcctgcagtttctcgacctgatccaggaaggcaacatcggtctgatgaaggcggtg
gacaagttcgagtaccggcgcggctacaagttctcgacctatgcgacatggtggatccgg
caggcgatcacccgttcgatcgccgaccaggcgcgcaccatccgcattccggtgcacatg
atcgagacgatcaacaagatcgtgcggacttcgcgccagatgctgcacgagatcggccgc
gagccgacgccggaggagctggcggaaaagctcgccatgccgctcgaaaaagtgcgcaag
gtcctgaagatcgccaaggagccgatcagcctcgagaccccggtgggcgacgaggaggat
tcgcacctcggcgacttcatcgaggacaagggcgccatcctgccgatcgacgcggcgatc
caggcgaacctgcgcgagacgacgacgcgcgtgctggcttcgctcactccgcgcgaggag
cgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgaccacacgcttgaagaggtc
ggccagcagttctcggtgacgcgcgagcgcatccgccagatcgaggccaaggcgctcagg
aagctcaagcatccgagccgcagccgcaagctgaggagcttcctcgacagctga
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