Mesorhizobium sp. ANAO-SY3R2: ABSY17_11200
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Entry
ABSY17_11200 CDS
T10784
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mess Mesorhizobium sp. ANAO-SY3R2
Pathway
mess03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mess00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABSY17_11200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mess03019
]
ABSY17_11200
Messenger RNA biogenesis [BR:
mess03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABSY17_11200
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
XHM78015
LinkDB
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Position
1333734..1335404
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AA seq
556 aa
AA seq
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MAKAQSAELVFVPLGGVGEIGMNFALYGFGPADAREWIIIDVGVTFPDATLPGVDLVLPD
TRFIEDDLKNLRGIVITHAHEDHYGALLDTWPKLKAPVWMTPFAAGLLEAKRQSEQGAPK
IPVTVYRGGEKFTIGPFEIEAIPVTHSIPEPMSLAITTPAGTVIHTGDWKIDPEPAIGPK
TDEQRFRAYGDEGVLALICDSTNALRDGDSPSEQQVGKGLRQVIEEAKGRVAVTTFSSNV
GRIRSIAEAARDAGRQVLVMGRSLKRVIDVSTELGYMDGLPEFVSEEDYGYIPRENLVVI
CTGSQGEPRAALAKLARDEMKQVALSPGDTVVFSSRTIPGNEKAILEIKNLLIDQGMKII
EDGDALVHVSGHPRRSELKRMYEWVRPRIGVPVHGEAAHLVGQGSLMAMCGIPEVAQIRD
GDMLRLWPGAAEIIDQVPFGRVFKDGKLIGSDEEMGIRDRRKLSFAGHVAVNVVLDDKYE
LSGDPDLVAIGVAEADASGEALEELMLDAAIGAVDSIPRARRKDLDLVQEAVRRAVRGAA
NEAWGKKPLVTVFVTR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagcgcaaagcgctgagctcgtattcgtgccgcttggcggcgtcggcgagatc
ggtatgaacttcgctctctacggttttggtccggcggatgcacgcgagtggatcatcatc
gacgtcggtgtgacgttccccgacgcgacattgcccggcgtcgacctcgttctgcccgac
acgcgcttcatcgaagacgatctgaagaatctgcgcggcatcgtcatcacccatgcccat
gaagaccactatggcgcgttgctcgacacctggcccaaactcaaggctccggtgtggatg
acgccttttgccgccggcctgctcgaggccaagcggcagtcggagcagggcgcgccgaag
attccagtgacggtctaccgcggcggcgagaagttcacgatcgggccgttcgagatcgag
gcgatcccggtcacccattcgatccccgagccgatgtcgcttgcgatcacgacgccggcc
ggaacggtcattcataccggcgactggaagatcgacccggagccggcgatcgggccgaag
accgacgagcagcgtttccgtgcctatggcgacgagggcgtgctggcgctgatctgcgat
tccaccaacgctctgcgcgatggtgactcgccttccgagcaacaggtcggcaagggactg
cgccaggttatcgaggaagccaaggggcgcgttgccgtcaccaccttctcctccaatgtc
ggtcgcatccgctcgatcgcggaagccgcgcgcgatgccggccgccaggtgctggtcatg
ggccgttcgctcaagcgcgttatcgatgtatcgaccgaactcggctacatggacggtctg
cctgaattcgtctcggaagaggactacggctacatcccgcgtgaaaatctcgtcgtcatc
tgcaccggcagccagggcgagccgcgcgcagcgttggccaagttggcgcgcgacgagatg
aaacaagtggcgctgtcgcccggcgatacggtggtgttttcctcgcgcacgatccccggc
aacgagaaggcgatcctcgagatcaagaacctgctcatcgaccagggcatgaagatcatc
gaagacggcgatgcgctggtccatgtctccggccacccgcgccgcagcgaactcaagcgc
atgtacgaatgggttcgtccgcgcatcggcgtgccggtgcatggcgaggcagcccatcta
gtcggacagggctcgctgatggcgatgtgtggcattcccgaagtggcccagatccgcgac
ggcgacatgctcaggctgtggcccggtgctgctgagatcatcgatcaggtgccgttcggc
cgcgtgttcaaggatggcaagctcatcggcagcgacgaggagatgggcatccgcgaccgg
cgcaagctgtcctttgccggccacgtcgccgttaacgttgtgcttgacgacaaatacgaa
ctctcaggcgacccggatctggtggcgattggcgtggccgaggctgatgccagcggcgag
gcgctcgaggaattgatgctcgatgcggcaataggcgctgtagactcgataccccgtgcg
cgccgaaaagacctcgacctggtgcaggaggcggttcggcgcgcggtgcgcggagcggcc
aacgaagcctggggcaagaaacctctggtgaccgttttcgtcaccaggtga
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