Microbacterium esteraromaticum: PTQ19_04240
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Entry
PTQ19_04240 CDS
T09665
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mest
Microbacterium esteraromaticum
Pathway
mest03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mest00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PTQ19_04240 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mest03400
]
PTQ19_04240 (mfd)
Enzymes [BR:
mest01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PTQ19_04240 (mfd)
DNA repair and recombination proteins [BR:
mest03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PTQ19_04240 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
MFD_D3
Mfd_cyano
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WDH79664
LinkDB
All DBs
Position
941013..944567
Genome browser
AA seq
1184 aa
AA seq
DB search
MTVPGILRALEEANLYRDALTWAQTDADISAVDGLDVPIVAGLLHKRAASGKPASALIVT
PTGRRAESVATALEAYLADAEVLTFPAWETLPHERLSPSPDTVGRRLETLRRITTWSGER
PLVVVASVRAALQPLAANLGDAAPLELAVGGRGLELEGAVEQLVERAYTRVDMVSRRGEF
AVRGGILDVFPPTADHPVRVEFFGDEIDQIRAFSVADQRSLPGDVAGVSLPASRELLLTA
EVRERAGALVAGFPAIGGMLEKMSEGIPVEGMESLLPAVAGPLVTLAEYLPAGSATAVID
PERASARAQNLGETNREFLDAAWSAATSGASAPIDLGAGDFISLARLREIVRDRDGVWWR
LSPFATDDDDAANLDSSVIPSFHGNVDGAIAFVETKLAEKWRVVIVASGQGLVERARDVL
SDRGLAARIVDDLVDAPEGGVASIAAATVESGFQVPDARIAVLTDNEFYGRTIGGDQRMV
KKLASRRRNVVDPLQLKPGDHVVHATHGIGRFVEMAQREVSSGGRNAVKTTRDYLVLEYA
PAKRGYPGDKLFVPTDQLDLLSKYVGGEAPTLSKMGGSDWAAAKGKARRAVRDIAVELVK
LYSARMSAKGHAFGPDTPWQRELEEAFPFAETPDQLQTIDEIKADMERPIPMDRLLSGDV
GFGKTEVAVRAAFKAIQEGKQVAMLVPTTLLVKQHLETFTERFAGFPVKVRPLSRFQTDK
EARLTLQGLVDGSVDMVIGTHRVLTDQVIFKDLGLMIIDEEQRFGVEHKDALKKMKTNVD
ILAMSATPIPRTLEMAVTGIREMSTLQTPPEDRHPILSFVGARSDKQIAAAIRREILREG
QVFFVHNRVQSIQRVAAELAELVPEARIAVAHGKMGEHQLEQVVDDFWERKYDVLVSTTI
IETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDDVKPLSETAADRL
QTIAVNNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLYLRMIGEAVATFRGED
TSGETELRLELPVDARIPEYYIDSERLRLEAYQKLSAAAGAGAADDAIDLVVEELVDRYG
AFPDEVSTLVKVARLRRRAAKAGLSDVVAMGSNLRIAPARFEDSMKVRLQRLYPKAKLVG
GGEALVVPMPAADAGSDQTDQLIDWVGNLFTAMFPEPVKAATAG
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
gtgactgttccggggattctgcgcgccttggaagaggcgaacctgtaccgagacgccctc
acctgggcgcagaccgatgccgatatctctgccgtcgacggactcgacgtgccgatcgtg
gcggggctgctgcacaaacgcgcagcgtccggcaaaccggcatccgctctcatcgtcacc
cccacgggccggcgtgcggagtccgtcgcgacggcgctggaggcctacctcgccgatgct
gaggtgctgaccttccccgcgtgggagaccctgccgcacgagcgcctgagccccagcccc
gacaccgtcgggcggcgtttggagacgctgcgccgcatcaccacctggagcggggagagg
ccgctcgtcgtggtcgcgtcggttcgggccgcgctgcagccgctggccgcgaacctgggc
gacgcggcaccgttggaactcgccgtgggcggtcgcggactcgagcttgaaggcgctgtt
gagcagttggtcgagcgtgcatacacgcgggtcgacatggtgtcgcgccgtggtgagttc
gcggtgcgcggtggcatcctcgacgtcttcccgcccaccgctgaccacccggtgcgggtg
gagttcttcggcgatgagatcgaccagatccgcgcgttctcggtcgccgatcagcggtcg
ctgcccggtgatgtcgccggggtgtcgctgcccgcgagccgcgagctgttgctgaccgct
gaggtgcgcgagcgtgcgggcgctctggtggcggggttccccgcgatcggcggaatgctc
gagaagatgtcggagggcattccggtcgagggcatggagtcgctgctgccggctgtcgcc
ggcccgttggtgacgcttgccgagtacctgcccgcaggatctgccacggccgtgatcgac
cccgagcgcgccagcgcgcgggcgcagaatctgggcgagacgaaccgtgagttcctggat
gcggcgtggagcgcggcgacctcgggtgcctcggcgccgatcgacctcggcgctggtgat
ttcatctcgctggcccggctgcgtgagatcgtccgtgaccgggacggcgtgtggtggcgg
ctgagcccgttcgcgaccgacgacgacgatgccgccaacctcgactcgtcggtgatcccg
tcattccacggcaacgtcgacggggcgatcgcgttcgtcgaaaccaaactcgccgagaag
tggcgcgtggtcatcgtcgcctcggggcaggggctggtcgagcgggcgcgcgacgtgctc
agcgaccgcgggctcgccgcgcgcattgtcgacgatctcgtcgacgcccccgagggcggc
gtggcgtcgatcgccgccgcgacggtcgagtcggggttccaggtgccggatgcccggatc
gccgtgctcaccgacaacgagttctacggccgcaccatcggcggcgatcagcggatggtc
aagaagctggcgtcgcgtcgtcgcaacgtcgtcgatccgctgcagctgaagcccggcgac
cacgtggtgcatgccacgcacggcatcgggcggttcgtcgagatggcgcagcgcgaggtg
tccagcggtggccgcaacgccgtcaagaccacgcgtgactacctggtgctcgagtacgcg
ccggccaagcgcggctaccccggcgacaagctgttcgtgcccactgaccagctcgacctg
ctctcgaagtacgtcggtggtgaagccccgacgctgtcgaagatgggcgggagtgactgg
gccgcggccaagggcaaggcacgccgcgcggtacgcgacatcgccgtcgaactggtgaag
ctctactcggcgcgcatgagtgcgaaggggcacgccttcggccccgacacgccctggcag
cgcgaactcgaagaggccttccccttcgctgagacaccggaccagctgcagacgatcgat
gagatcaaggccgatatggagcggccgatcccgatggatcgtctgctgtcgggcgatgtg
ggcttcggtaagaccgaggttgccgtccgtgctgccttcaaggcgatccaggagggcaag
caggtcgccatgctcgtgccgaccacgctgctggtcaagcagcaccttgagacgttcacc
gagcgtttcgccggattcccggtcaaggtgcgccccctgtcgcgtttccagactgacaaa
gaggcccggctcaccctgcaggggctcgtcgacggttcggtcgacatggtcatcggcacg
catcgtgtgctcaccgatcaggtgatcttcaaggacctcggtctgatgatcatcgacgag
gagcaacgcttcggcgtcgagcacaaggatgccctcaagaagatgaagacgaacgtcgac
atcctcgccatgagcgccacgccgatcccacgcacgctcgagatggccgtcaccggcatc
cgtgagatgtcgactctgcagacgccgcccgaggaccggcatccgatcctgtcgttcgtc
ggggcgcgcagcgacaagcagatcgcggcggcgatccgccgcgagattctgcgcgagggt
caggtgttcttcgtgcacaaccgcgtgcagtcgattcagcgggtcgcggccgagctcgcc
gagctggtgcccgaggcacgcatcgccgtcgcacacggcaagatgggcgagcaccagctc
gagcaggtcgtcgacgacttctgggagcgcaagtacgacgtgctcgtctcaaccacgatc
atcgagaccggtctcgacatctccaacgccaacacgatcatcatcgaccgcgccgacaag
tacggtctgtcgcagctgcatcagctgcgtggtcgcgtgggtcgcggacgcgagcgcgcc
tacgcatacttcctgtacgacgatgtcaagccgctcagcgagacggccgccgatcgcctg
cagaccatcgccgtcaacaacgacctcggttcgggtatgcaggtcgcgctgaaggacctc
gagctgcgcggtgccggaaaccttctgggcgccgagcaggccggtcacatcgccggtgtc
ggattcgacctgtacctgcgcatgatcggcgaggccgtggcgacgttccgcggcgaggac
acctcgggcgagaccgagctgcgtcttgaactgcccgtcgacgcgcgcatccccgagtac
tacatcgacagtgagcgcctgcgtctggaggcctaccagaagctgtcggccgcggccggt
gcgggggcggccgacgatgcgatcgatctggtcgtcgaagagctggtcgaccggtacggg
gcgttcccggacgaggtgtcgacgctggtgaaggtggcgcggctgcgtcgccgtgcggcg
aaggccggtctgtcggatgtcgtcgcgatgggctccaatctgcgcatcgccccggcacgc
ttcgaggactcgatgaaggtgcgtctgcagcggctgtatccgaaggccaagctcgtgggc
gggggagaggcgcttgtcgtgccgatgccggccgctgatgcgggttcggatcagaccgat
cagctcatcgactgggtcgggaacctgttcaccgcgatgttccccgaacccgtgaaagcc
gcaaccgccggctag
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