Mesorhizobium sp. AR10: LHFGNBLO_000006
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Entry
LHFGNBLO_000006 CDS
T10612
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mesu Mesorhizobium sp. AR10
Pathway
mesu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHFGNBLO_000006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesu03019
]
LHFGNBLO_000006
03400 DNA repair and recombination proteins [BR:
mesu03400
]
LHFGNBLO_000006
Enzymes [BR:
mesu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LHFGNBLO_000006
Messenger RNA biogenesis [BR:
mesu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LHFGNBLO_000006
DNA repair and recombination proteins [BR:
mesu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LHFGNBLO_000006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HNH
HNH_5
ResIII
RecQ_Zn_bind
Cas3-like_C_2
T4SS-DNA_transf
HNH_4
HNH_2
Motif
Other DBs
NCBI-ProteinID:
UVK38728
LinkDB
All DBs
Position
4282..5946
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AA seq
554 aa
AA seq
DB search
MIRQQVLHRDGYCCVSCGIRLKSADADVHHLLPRSMGGTDEMSNLVTLCDGCHARHHPNL
AGGLARRAIERWAVRLARWLDREGLLTEATGNFGPALRLFGLQRFRYGQLPIILAALSGK
SVLVVSPTGSGKTLCFQLPAVLRRGVALVVSPLKALMSEQVSDLLAKKIPATFINSDLSR
DEKETRFSLLGLKAIKLLYVAPERFFVRSDAERSQLKRSEPSFLIIDEAHCVDRWGEDFR
PEYGRLREVREKLGAPPVLAFTATAGKEMQDRILASLGIPDAKVFVRDVDRPNIAMLRRH
CRSEQRALEIASMLALPQLKGQKAMVFVPTVKVGDELRTALSAMGLDIPFYHSKLGTAWE
RQELVKRFLGQSRPVVDQIVCTNAFGMGLDVPNVRLVVHWQQSASVEDLLQEFGRAGRDG
KPSISVMFHDGTSRGDTGRLKFMAEMTVSNAPGDENQRAVMLEQRTRNIDQVAGMLRSTS
CFRKSIRNYFGDSEKRHKLSLAERILEWVFGTPAPRTHHTACCDSCDAATIKKHGTIAYV
TQVIGGEFPHLRRK
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgatccggcagcaggttttgcaccgtgacggctattgctgtgtctcttgcggcatcagg
ctcaagtcggcggatgcagacgtccaccatttgctccctcgctcgatgggcggtaccgac
gaaatgtcgaacttagtcacgctctgcgacggctgtcacgcgcgccatcacccaaacttg
gctggtggtctggcaagacgggcgattgagagatgggccgtgaggctcgcgagatggctg
gaccgagaaggattgctgaccgaagccacaggtaactttggacctgctctacgcctgttt
gggctgcagcgatttcgttacggtcagttgccaatcatattggcggcgctttccggaaaa
tccgtgttagtcgtcagtcctacaggttccggcaaaaccctatgctttcagcttcccgcg
gtgctgaggcgtggggtcgcccttgttgtttctcccttgaaggcgctgatgtccgaacaa
gtgtccgaccttctggccaagaaaataccggcaacgttcatcaacagtgatctcagccgc
gacgagaaggagacccgcttttctctgcttggcctgaaggccatcaagctcctctacgtg
gcgccggagcgcttcttcgttcgcagcgatgcggagcgcagccaactcaagcggagcgag
ccgtcctttcttatcatagacgaggcccattgcgttgaccgctggggagaggactttcga
ccggagtatggccggttgcgtgaagttcgagaaaagctaggtgccccaccagtcttggca
ttcacggcgaccgccggaaaggagatgcaggatcggatcctcgcgtcgcttggcattccg
gatgcaaaggtgttcgtccgcgatgtggataggccaaacatcgcgatgttgcgacggcat
tgtcgatctgaacagcgggcgctggaaatagcatccatgttggcgctgccccagttgaag
gggcagaaggcgatggtcttcgtccctacggtaaaagtgggtgacgagctgcgaactgct
ctgtcggcgatgggattggacatcccattctatcattccaagctgggtactgcatgggag
cggcaggaactcgtgaagcgcttcttgggacagagccgcccagtggtcgatcagattgtc
tgcaccaacgcctttggcatgggcctcgacgttcctaacgtgcggttggtggtgcactgg
caacaatcagcatctgttgaagacctgttgcaggagtttggccgcgctggaagagatggg
aagccgtcgatctcggtcatgtttcacgacggtacgagtcgaggtgatacgggacgcctc
aaattcatggccgagatgactgtttcgaacgcaccgggggatgaaaaccaaagggcggtc
atgctggaacagcggacccggaacatcgatcaagtggccggaatgctccgctcgacttct
tgttttcgtaagtcgatccgcaactatttcggcgatagcgagaaacggcacaaactgagc
cttgcagagcggatcctagaatgggtttttggaacacctgcgccgagaacccaccacacc
gcttgctgcgatagctgcgacgccgcaaccatcaaaaaacatggcacgatagcttatgtt
acgcaggtcatcggaggtgaattcccgcatttaaggcgaaaataa
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