Mesorhizobium sp. AR10: LHFGNBLO_001087
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Entry
LHFGNBLO_001087 CDS
T10612
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mesu Mesorhizobium sp. AR10
Pathway
mesu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHFGNBLO_001087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesu03019
]
LHFGNBLO_001087
03009 Ribosome biogenesis [BR:
mesu03009
]
LHFGNBLO_001087
Enzymes [BR:
mesu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LHFGNBLO_001087
Messenger RNA biogenesis [BR:
mesu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LHFGNBLO_001087
Ribosome biogenesis [BR:
mesu03009
]
Prokaryotic type
rRNA helicases
LHFGNBLO_001087
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WHIM1
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UVK39691
LinkDB
All DBs
Position
complement(1158736..1160598)
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AA seq
620 aa
AA seq
DB search
MSNFEAIVPALAKALEKRGYSELTPVQKAVLELGQADALVSAQTGSGKTVAFGLALAPTL
LGDAERFAHAAAPLALAVAPTRELALQVTRELEWLYELTGATVASCVGGMDMRTERRALE
RGAHIVVGTPGRLRDHITRHSLDMSALKAVVLDEADEMLDLGFREDLEFILDAAPAARRT
LMFSATVPRSIATLAKGYQRDAVRISASGEEKQHLDIEYRALSVAQADRENAIINVLRFY
EAKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIATD
VAARGIDLPNLELVIHADLPTNPETLLHRSGRTGRAGRKGVSALIVPNSARRRTERLLQS
AGLKATWASPPSADDVIRRDDERILADPAFDEPLKDDERGFIDALLARHGAEQVAAAFVR
LCRASRSAPEDLMDVAPFTPSREKLAGEKFACGDEAPSRRDDFGDSVWFSVSVGRRQNAE
PRWLIPMLCRTGGITKREIGAIKMQPEETFVQIAADWADRFLAAIGPDRKLQNNIVVKRL
DGTPDLSRAGYQPPSPDKKPHRGKRPFDQNAPQGAHKSKFEKRAPSSERPEAKPWAAKAG
KPKFDKAGPPKHKKSKNRPA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacttcgaagctattgttccagcgctggcaaaggcgctggaaaaacgcggctat
tccgagctgacgccggtgcaaaaggcggttctggagctcggccaggccgacgcgctggtt
tcggcccagaccggctccggcaagaccgtcgcctttggcctggcgctggcgccgaccctg
ctgggcgatgccgagcgctttgcccatgccgcagcaccgctggcgctggccgtggcgccg
acgcgcgaactggccctgcaagtcacgcgcgagctggaatggctttacgaactgaccggc
gcgaccgtggcctcctgtgtcggcggcatggacatgcgcaccgaacgccgggcgctggag
cgcggcgcccatatcgtcgtcggcacgcccggccggctgcgagaccacatcacgcggcac
tcgctcgacatgtcggcgctcaaggccgtagtcctcgacgaagccgacgaaatgctcgat
ctcggctttcgcgaagatctcgaattcatcctcgacgccgccccggccgcgcgccgcacc
ctgatgttttcggccaccgtgccgcgctccatcgccacgctggccaagggctaccagcgc
gatgcggtgcgcatctccgcctccggcgaggaaaagcagcatctcgacatcgaataccgg
gcgctgagcgttgcccaggccgaccgggaaaacgccatcatcaatgtgctgcgcttttac
gaggcgaagaacgccctggtgttctgcaacacccgtgcggccgtcaaccatctgaccgcg
cgcttcaacaatcgcaacttctccgtcgtcgcactttccggcgagctcagccagaacgag
cgcagccatgcgctgcaggcgatgcgcgacggccgcgccaaggtctgcatcgccaccgac
gtagcggcacgcggcatcgacctgcccaacctcgaactggtgatccacgccgacctgccg
accaacccggagacgcttctgcaccggagcggacggacgggacgtgcgggacgaaaaggc
gtcagcgcgctgatcgtgcccaacagcgcccgcaggcgcaccgaacggctgttgcaaagc
gccggcctcaaggcgacatgggcaagcccaccttcggccgacgatgtgatccggcgcgac
gacgagcgcattctcgccgatccggctttcgacgagcccctaaaggatgacgagcgcggc
ttcatcgacgcgctccttgccaggcacggcgccgaacaggtggccgccgccttcgtgcgc
ctgtgccgcgccagccgctcggcgcccgaggatcttatggacgtcgccccgttcacgcct
tcgcgtgaaaaactggcgggcgaaaaattcgcatgtggggacgaggcgcccagccgccgc
gacgatttcggcgacagcgtctggttctctgtgtcggtggggcggcggcagaatgccgag
ccgcgctggctgatccctatgctctgccgcaccggcggcataaccaagcgcgagatcggc
gccatcaagatgcagccggaggaaaccttcgtgcagatcgcagccgattgggccgaccgt
ttcctcgccgccatcggccccgatcgcaagctgcagaacaacatcgtggtgaaacggctg
gacggcacgcccgacctgtcgcgcgctggctaccagccgccaagcccggacaagaagccg
catcgcggcaagcggccgtttgaccagaatgcgccccaaggtgcccacaagtcgaaattc
gaaaagcgcgcgccatcgtcagagcgtcctgaggcaaagccctgggccgcgaaagcgggc
aagccgaaattcgacaaggccggaccgccgaagcacaagaagtcgaagaaccggccggcc
tga
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