KEGG   Mesorhizobium sp. AR10: LHFGNBLO_003295
Entry
LHFGNBLO_003295   CDS       T10612                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
mesu  Mesorhizobium sp. AR10
Pathway
mesu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mesu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LHFGNBLO_003295
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mesu03019]
    LHFGNBLO_003295
Messenger RNA biogenesis [BR:mesu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     LHFGNBLO_003295
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B_2 Lactamase_B RMMBL Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: UVK36382
LinkDB
Position
3444975..3446645
AA seq 556 aa
MAKADNAELVFVPLGGVGEIGMNFALYGYGPANAREWIVVDVGVTFPDASLPGVDLVLPD
TRFIEENLANLRGIIITHAHEDHYGALLDLWPKLKAPVWMTPFSAGLLEAKRQGEQGAPK
IPLTIYRAGEKFTVGPFEIEAIPVAHSIPEPMSLAITSPAGTVIHTGDWKIDPEPTIGPK
TDEARFRAYGDKGVLALICDSTNALREGESPSEVAVGEGLKGVIQSAKGRVAVTTFSSNV
GRIVSIARAARDAGRQCLVLGRSLKRVIDVAGELGYMDGLPEFIAEEDFGFIPRENLVII
CTGSQGEPLAALAKLSRDEMKSVSFTAGDTVVFSSRTIPGNEKAILEIKNRLIDLGIKII
EDGDALVHVSGHPRRSELRKMYEWVRPQIGVPVHGEAAHLVAQGSLMSTSGIGQVAQVRD
GDMLRLAPGAATIIDQVPFGRIYKDGRLIGTDQAMGIRDRRKLSFAGHVAVNVVLDDKYE
LAGDPDLVAIGVAEADASGETLEDLMIDAAIGAVDSIPRQRRKDLDLVQEAVRRAVRGAA
NEAWGKKPLVTVFVTR
NT seq 1671 nt   +upstreamnt  +downstreamnt
atggcgaaagctgacaacgccgaactcgtgttcgtgcccctcggcggcgtcggcgagatc
ggcatgaacttcgccctctacggctacgggccggccaatgcgcgcgagtggatcgtcgtc
gatgtcggcgtcaccttccccgacgccagcctgcctggcgtcgatctggtgctgcccgac
acgcgcttcatcgaggagaacctcgccaatctgcgcggcatcatcatcacccatgcgcat
gaagaccactacggtgccttgctcgacctctggccgaagctgaaggcgccggtgtggatg
acaccgttcagtgccggattgcttgaggccaagcggcagggcgagcagggggcaccgaag
atcccgttgacgatctaccgggccggcgaaaaatttactgtcggaccgttcgagatcgaa
gccatcccggtcgcgcattcgatccccgagccgatgtcgctggcgatcacctcgccggcc
ggcaccgtcatccacaccggcgactggaagatcgatccggagccgacgatcgggccgaag
acagacgaggcgcgtttccgcgcctatggcgacaagggcgtgctggcgctgatctgcgat
tcgaccaatgcgctgcgggaaggcgagtcgccttcggaagtggccgtcggcgagggcctg
aagggcgtcatccagagcgccaagggccgtgttgccgtcaccacattctcctccaatgtc
ggacgcatcgtgtccatcgcaagagcggcgcgggatgccggccgtcagtgcctggtgctt
ggccgctcgctgaagcgcgtcatcgatgtggcgggtgagctcggctatatggacgggctg
ccggaattcatcgccgaggaggactttggtttcatcccgcgcgaaaacctcgtcatcatc
tgcaccggcagccagggcgagccgcttgccgcattggcaaagctgtcgcgagacgagatg
aaatcggtgtcgttcacggccggcgacacggtggtgttttcctcgcgcaccattcccggt
aacgagaaggcgatcctcgagatcaagaaccgcctcatcgatctcggcatcaagatcatc
gaagatggcgatgcgctggtgcatgtctccggccatccgcgccgcagcgaattgcgcaag
atgtatgaatgggtgcgcccgcagatcggcgttcccgtccacggcgaggcggcgcatctg
gtggcgcaggggtcgctgatgtcgacgtcgggcatcggccaggtggcgcaggtgcgcgac
ggcgacatgctgcggcttgctccaggtgcggccacgatcatcgatcaggtgccgttcggc
cgcatctacaaggacggcaggctgatcggcaccgaccaggcgatgggtatccgcgaccgg
cgcaagctgtcctttgccggccatgtcgcggtcaatgtcgtgctcgacgacaagtatgag
ctcgccggcgatcccgacctggtcgccatcggcgtcgccgaggccgatgccagcggcgaa
acactggaagacctgatgatcgatgcggcaatcggcgctgtggactcgatccctcgtcag
cgccgaaaagacctcgacctcgtacaggaggcggtgcgccgcgccgtgcgcggtgccgcc
aacgaagcctggggcaaaaagcctctggtgactgtgtttgtcacgcggtga

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