Mesorhizobium sp. AR10: LHFGNBLO_003295
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Entry
LHFGNBLO_003295 CDS
T10612
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mesu Mesorhizobium sp. AR10
Pathway
mesu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LHFGNBLO_003295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesu03019
]
LHFGNBLO_003295
Messenger RNA biogenesis [BR:
mesu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LHFGNBLO_003295
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UVK36382
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Position
3444975..3446645
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AA seq
556 aa
AA seq
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MAKADNAELVFVPLGGVGEIGMNFALYGYGPANAREWIVVDVGVTFPDASLPGVDLVLPD
TRFIEENLANLRGIIITHAHEDHYGALLDLWPKLKAPVWMTPFSAGLLEAKRQGEQGAPK
IPLTIYRAGEKFTVGPFEIEAIPVAHSIPEPMSLAITSPAGTVIHTGDWKIDPEPTIGPK
TDEARFRAYGDKGVLALICDSTNALREGESPSEVAVGEGLKGVIQSAKGRVAVTTFSSNV
GRIVSIARAARDAGRQCLVLGRSLKRVIDVAGELGYMDGLPEFIAEEDFGFIPRENLVII
CTGSQGEPLAALAKLSRDEMKSVSFTAGDTVVFSSRTIPGNEKAILEIKNRLIDLGIKII
EDGDALVHVSGHPRRSELRKMYEWVRPQIGVPVHGEAAHLVAQGSLMSTSGIGQVAQVRD
GDMLRLAPGAATIIDQVPFGRIYKDGRLIGTDQAMGIRDRRKLSFAGHVAVNVVLDDKYE
LAGDPDLVAIGVAEADASGETLEDLMIDAAIGAVDSIPRQRRKDLDLVQEAVRRAVRGAA
NEAWGKKPLVTVFVTR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagctgacaacgccgaactcgtgttcgtgcccctcggcggcgtcggcgagatc
ggcatgaacttcgccctctacggctacgggccggccaatgcgcgcgagtggatcgtcgtc
gatgtcggcgtcaccttccccgacgccagcctgcctggcgtcgatctggtgctgcccgac
acgcgcttcatcgaggagaacctcgccaatctgcgcggcatcatcatcacccatgcgcat
gaagaccactacggtgccttgctcgacctctggccgaagctgaaggcgccggtgtggatg
acaccgttcagtgccggattgcttgaggccaagcggcagggcgagcagggggcaccgaag
atcccgttgacgatctaccgggccggcgaaaaatttactgtcggaccgttcgagatcgaa
gccatcccggtcgcgcattcgatccccgagccgatgtcgctggcgatcacctcgccggcc
ggcaccgtcatccacaccggcgactggaagatcgatccggagccgacgatcgggccgaag
acagacgaggcgcgtttccgcgcctatggcgacaagggcgtgctggcgctgatctgcgat
tcgaccaatgcgctgcgggaaggcgagtcgccttcggaagtggccgtcggcgagggcctg
aagggcgtcatccagagcgccaagggccgtgttgccgtcaccacattctcctccaatgtc
ggacgcatcgtgtccatcgcaagagcggcgcgggatgccggccgtcagtgcctggtgctt
ggccgctcgctgaagcgcgtcatcgatgtggcgggtgagctcggctatatggacgggctg
ccggaattcatcgccgaggaggactttggtttcatcccgcgcgaaaacctcgtcatcatc
tgcaccggcagccagggcgagccgcttgccgcattggcaaagctgtcgcgagacgagatg
aaatcggtgtcgttcacggccggcgacacggtggtgttttcctcgcgcaccattcccggt
aacgagaaggcgatcctcgagatcaagaaccgcctcatcgatctcggcatcaagatcatc
gaagatggcgatgcgctggtgcatgtctccggccatccgcgccgcagcgaattgcgcaag
atgtatgaatgggtgcgcccgcagatcggcgttcccgtccacggcgaggcggcgcatctg
gtggcgcaggggtcgctgatgtcgacgtcgggcatcggccaggtggcgcaggtgcgcgac
ggcgacatgctgcggcttgctccaggtgcggccacgatcatcgatcaggtgccgttcggc
cgcatctacaaggacggcaggctgatcggcaccgaccaggcgatgggtatccgcgaccgg
cgcaagctgtcctttgccggccatgtcgcggtcaatgtcgtgctcgacgacaagtatgag
ctcgccggcgatcccgacctggtcgccatcggcgtcgccgaggccgatgccagcggcgaa
acactggaagacctgatgatcgatgcggcaatcggcgctgtggactcgatccctcgtcag
cgccgaaaagacctcgacctcgtacaggaggcggtgcgccgcgccgtgcgcggtgccgcc
aacgaagcctggggcaaaaagcctctggtgactgtgtttgtcacgcggtga
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