Mesorhizobium sp. WSM1497: A9K65_023015
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Entry
A9K65_023015 CDS
T04915
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mesw
Mesorhizobium sp. WSM1497
Pathway
mesw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9K65_023015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesw03019
]
A9K65_023015
03016 Transfer RNA biogenesis [BR:
mesw03016
]
A9K65_023015
Enzymes [BR:
mesw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A9K65_023015
Messenger RNA biogenesis [BR:
mesw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A9K65_023015
Transfer RNA biogenesis [BR:
mesw03016
]
Prokaryotic type
tRNA degradation factors
A9K65_023015
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ARP65896
LinkDB
All DBs
Position
4707908..4710226
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AA seq
772 aa
AA seq
DB search
MARKITGRTHGDPRTADTRAKVKDDYRPSRDEILRYIAENPDRAGKRDIAKAFALRGDDR
IWLKDILRDLQDEGVLTKERKGLARVGALPHVTVLDIFDRDADGVLLARPTEHTANGPPP
IVSIRLSRSGSGPAPGIGDRVLAKTFPADDTNVALGGPAYTGRVVKIFEKRTDAVLGIFR
ILQDGTFRIEPVERRQPELIVDKEFQNGAKNGDLVEVEPARASRFGLPRAKVLNVLGSLT
SEKAVSMIAIHAHDIPHIFPADVIAESEAVKPATLDHREDWRDLPLVTIDPADAKDHDDA
VFATPDLDEKNPGGVVATVAIADVAAYVRYGTALDREALKRGNSVYFPDRVVPMLPERIS
NDLCSLREGQDRPALAVRMIFSAEGRKLRHTFHRVMMKSAAKLAYQQAQAAIDGAPDDKT
GPILETVLKPLWDAYAILKRGRDGRQPLELDLPERKIVLKPDGTVDRVIVPERLDAHKLI
EEFMIQANVAAAETLEAKKQELVYRVHDAPSLAKQESLREFLQTLGLSLARGAQMQPSQF
NGILERVRGADNEGLVNEVVLRSQSQAEYSPKNIGHFGLNLRRYAHFTSPIRRYADLIVH
RGLIAALGLGPGGLTQDEAARLEDVAVLISGTERRAMAAERDTVDRLIAAYLAERVDDRF
DARISGVTKSGLFVQLPQYGADGFIPVSTLGGDYYIYDETARSLFGERSGKGYQLADRVE
VRLIEVAPMAGAMRFEMLTDPKPLPGSKRSFHKAKGRARASQSRPGSRGRRR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgcaagatcaccggcagaacccacggcgatccgcgcaccgccgacaccagggcc
aaggtcaaggacgactatcggccgtcgcgtgacgaaatcctgcgctacattgccgaaaat
cctgatcgcgccggcaagcgcgacatcgccaaggcgttcgcgctgcgcggcgacgaccgc
atctggctgaaggatattttgcgcgacctgcaggacgaaggcgtcctcaccaaggagcgc
aaggggctggcccgcgtcggtgccctgccccatgtcacggtcctcgatattttcgaccgc
gatgccgatggcgtgctcttggcgcgcccaaccgaacacacagccaatgggccgccgccg
atcgtttccatccgcctgtcgcgcagtggcagtggaccggcgcccggcattggcgaccgc
gtgctggccaagacctttccggccgacgacacgaacgtcgccctgggcggccccgcctac
accgggcgggtggtgaagattttcgaaaaacgtaccgatgccgtgctcggtatctttcgc
atcctgcaggacggcaccttccgcatcgaaccggtggaacggcgccagcccgaactgatc
gtcgacaaggaattccagaacggcgccaagaatggcgacctggtcgaggtcgagccggcg
cgagcctcccgtttcggcttgccgagagccaaggtgctcaacgtgctgggctctctgacc
agcgaaaaggcggtctctatgatcgccatccatgcgcacgacattccgcatatcttcccg
gccgacgtcatcgcagaatccgaagccgtcaaaccggcgacgcttgaccatcgcgaggat
tggcgcgacctgccgctggtcaccatcgatccggccgacgccaaggaccatgacgacgcc
gtcttcgccacgccggatctcgacgagaagaaccccggcggcgtggttgccaccgtggcg
atcgccgacgtcgccgcctatgtgcgctatggcactgcactcgaccgcgaagcgctgaag
cgcggcaactcggtctatttcccggatcgtgtcgtgccgatgctgcccgagcgcatctcc
aacgatctctgctcgctgcgcgagggccaggaccggccggcattggcggtgcgcatgatc
ttttcggccgagggccgcaagctcaggcacaccttccatcgcgtcatgatgaagtcggcg
gcaaagctcgcctaccaacaggctcaggcggcgatcgacggcgcgccggacgacaagaca
ggcccgatcctcgaaaccgtgctgaagccactgtgggacgcctatgcgatcctgaagcgc
ggccgcgatggccgccagccgctcgaactcgatctgccggagcgcaagatcgtactcaag
ccggacggcaccgtcgaccgcgtcatcgtgccggagcggctcgatgcccacaagctcatc
gaagaattcatgatccaggccaatgtcgccgcggccgagacgctggaggcgaagaagcag
gagctggtctatcgcgtccacgacgcgccgtcgctcgccaagcaggaatcgctgcgcgag
ttcctgcagacattgggcctgtcactggcgcgcggcgcgcagatgcagccaagccagttc
aacggcattttggagcgcgtgcgcggcgccgacaatgaaggcctcgtcaacgaagtggtg
ctgcgctcgcagagccaggccgaatactcgccaaagaacatcggccatttcggtctcaac
ctccgccgctacgcccatttcacctcgccgatccgccgctatgccgatttgatcgtgcat
cgcggacttattgccgcactcggactgggtccgggtgggctgacgcaggacgaagcggca
cggctcgaagatgtcgcggtgctgatctccggcacggaacgccgcgcaatggcggccgag
cgggacacggtcgaccgtctgatcgccgcctatctcgccgaacgcgtcgatgaccgcttc
gatgcccgcatctccggcgtcaccaaatcaggactatttgtccaattgccgcagtacggc
gcggatggtttcatcccggtgtcaactctgggcggcgattactatatatacgatgaaacg
gctcgctccctgttcggagaacgctctggcaaaggctaccaactcgcggaccgcgtcgag
gtccggcttatcgaggtggcgccgatggccggcgcaatgcgctttgagatgttgaccgac
ccaaagcctctgccgggctccaagcggtcgtttcacaaggccaagggccgcgcccgcgcg
tcgcaatcgcgaccgggttcgcgcggcaggagacgatga
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