Mesorhizobium sp. 131-2-1: MesoLj131a_23010
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Entry
MesoLj131a_23010 CDS
T11814
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mesx Mesorhizobium sp. 131-2-1
Pathway
mesx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mesx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MesoLj131a_23010 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesx03021
]
MesoLj131a_23010 (rpoD)
Transcription machinery [BR:
mesx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MesoLj131a_23010 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF3106
DUF4351
Motif
Other DBs
NCBI-ProteinID:
BCG93437
LinkDB
All DBs
Position
2356773..2358803
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AA seq
676 aa
AA seq
DB search
MATKEKEEVETEREGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTSEQ
IEDTMAMLSDMGINVVEDDEQGEEPEGGDSSADAEEDANELAEQTGTAVATTTTKKEPTD
RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDELN
ESKILLREIIDLEATYAGPEAKQAPVVERIEEAPKAEEKPRGRGAAREEEDDITNVGSDT
RGLEEDEDDEDEASLSLAAMEAELRPQVMETLDVIADTYKKLRKLQDQQVENRLAAAGTL
SPSQDRRLKELKDQLIKAVKSLSLNTARIEALVEQLYDINKRLVQNEGKLLRLAESYGVR
REEFLKEYQGSELDPNWTRSIANLTSRGWKEFTKNEKDTIKDLRAEIQNLATETAISILE
FRKIVNQVQKGEREAAIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGRE
PTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKMAILPIDAAIQ
ANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRK
LKHPSRSRKLRSFLDS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaaaggaaaaggaagaggtcgagaccgaacgtgaaggcgccaccgatggccct
ctgctcgacctttccgatgatgctgtcaagaagatgatcaaggccgccaagaagcgcggc
tacgtcacgatggacgaactgaactcggtgctgccttcggaggaagtgacctccgagcag
atcgaggacacgatggcgatgctgtccgacatgggcatcaacgtggtcgaggacgacgag
cagggcgaggaaccggaaggcggcgactctagcgccgacgccgaggaagacgccaatgag
ctcgccgagcagacgggcaccgcggtcgccaccacgaccaccaagaaagagccgaccgat
cgcaccgacgatccggtccgcatgtatctgcgcgagatgggctcggtcgagcttctgtcg
cgcgagggcgaaatcgccattgccaagcgcatcgaggctggccgcgagacgatgatcgcg
ggcctgtgcgagagcccgctgaccttccaggccatcatcatctggcgcgacgagctcaac
gaatcgaagatcctgctgcgcgagatcatcgatctggaagccacctatgccgggcccgag
gccaagcaggcgccggtggtcgagcggatcgaggaagcccccaaggccgaggaaaagccg
cgcggccgcggcgccgcgcgcgaggaagaagacgacatcaccaatgtcggcagcgacacg
cgcgggctggaagaggacgaggacgacgaggacgaggcgagcctgtcgctggcggcgatg
gaagcggaactgcgtccgcaggtgatggagacgctcgacgtcatcgccgacacctacaag
aagctccgcaagctgcaggaccagcaggtcgagaacaggctggccgccgccggcacgctg
tcgcccagccaggaccgccggctgaaggagctgaaggaccagctgatcaaggcggtgaag
tcgctgtcgctcaacactgcgcgcatcgaggcgctggtcgagcagctctacgacatcaat
aagcgcctggtgcagaacgagggcaagctgctcaggctcgccgaaagctatggcgtgcgc
cgcgaggagttcctcaaggaataccagggttccgagctcgacccgaactggacgcgctcg
atcgccaatctgacctcgcgtggctggaaggaattcaccaagaacgagaaggacacgatc
aaggacctgcgcgccgagatccagaacctcgccaccgaaacggcgatctcgatcctggaa
ttccgcaagatcgtcaaccaggtgcagaagggcgagcgggaagccgcgatcgccaagaag
gaaatggtggaggcgaacctgcgcctcgtcatctccatcgccaagaaatacaccaaccgc
ggcttgcagttcctcgacctgatccaggaaggcaatatcggcctgatgaaggcggtcgac
aaattcgagtaccgccgcggctacaagttctcgacctacgcgacatggtggatccggcag
gcgatcacccgttcgatcgccgaccaggcgcgcaccatccgcattccggtgcacatgatc
gagacgatcaacaagatcgtgcgtacctcgcgccagatgctgcacgagatcggccgcgag
ccgacgccggaggaactggccgagaagctggccatgccgctggaaaaggtgcgcaaggtg
ctgaagatcgccaaggagccgatctcgctcgaaacgcctgtcggcgatgaggaggattcg
catcttggcgacttcatcgaggacaagatggcgatcctgccgatcgacgcggcgatccag
gccaatctgcgcgagacgacgacccgcgtgctggcgtcgctgacgccgcgcgaggaacgt
gtcctgcgcatgcgcttcggcatcggcatgaacaccgaccacacgctggaagaggtcggt
cagcagttctcggtgacgcgcgagcgcatccgccagatcgaggccaaggcgctgcgcaag
ctcaagcacccgagccggagcaggaagctgaggagcttcctggacagttag
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