Methylocystis sp. SB2: LNB28_02040
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Entry
LNB28_02040 CDS
T10237
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
mesz Methylocystis sp. SB2
Pathway
mesz00260
Glycine, serine and threonine metabolism
mesz00460
Cyanoamino acid metabolism
mesz00630
Glyoxylate and dicarboxylate metabolism
mesz00670
One carbon pool by folate
mesz00680
Methane metabolism
mesz01100
Metabolic pathways
mesz01110
Biosynthesis of secondary metabolites
mesz01120
Microbial metabolism in diverse environments
mesz01200
Carbon metabolism
mesz01230
Biosynthesis of amino acids
mesz01240
Biosynthesis of cofactors
mesz04981
Folate transport and metabolism
Module
mesz_M00346
Formaldehyde assimilation, serine pathway
Brite
KEGG Orthology (KO) [BR:
mesz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
LNB28_02040
09102 Energy metabolism
00680 Methane metabolism
LNB28_02040
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
LNB28_02040
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
LNB28_02040
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
LNB28_02040
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
LNB28_02040
Enzymes [BR:
mesz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
LNB28_02040
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
DegT_DnrJ_EryC1
Beta-prop_WDR5
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-ProteinID:
ULO24216
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Position
complement(403922..405196)
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AA seq
424 aa
AA seq
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MSQSGFFTASLSASDPEIAKAIELELGRQRHEIELIASENIVSKAVLEAQGSVLTNKYAE
GYPGKRYYGGCQFVDIAENLAIDRAKKLFDCGFANVQPNSGSQANQAVFLALLQPGDVFM
GLDLAAGGHLTHGSPVNVSGRWFKPVSYTVRKDDQRIDMEQVAALAQEHKPKLIIAGGSG
YSRIWDFEGFRKIADSVGAYFMVDMAHFAGLVAAGLHPSPLPHAHVVTTTTHKTLRGPRG
GMVLTNDEAIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTPQFKTYQQQVKDNAQML
AQTLVDAGLAIVSGGTDNHLMLVDLRPKKITGKAAEAALGRAHITCNKNGIPFDPEKPFV
TSGIRLGSPAATSRGFGQNEFKQVGQMIVEVLDGLSSQGEEGNAATEAAVKEKVHTLTAK
FPIY
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgagccaatccggtttcttcaccgcctccctcagcgcttccgatccggaaatcgcgaag
gcgatcgaactcgaactcggccgccagaggcacgagatcgaactgatcgcgtcggagaac
attgtctcaaaggcggtgttggaggcccagggctcggttctcaccaacaaatacgccgag
ggctatcccggaaagcgctattacggcggctgccaattcgtcgacatcgccgagaatctc
gcgatcgaccgcgccaagaagctgttcgactgcggtttcgccaatgtgcagcccaactcc
ggctcgcaggccaatcaggcggtgttcctcgcgcttcttcagccgggcgacgtctttatg
gggctggatctcgccgcgggcggtcatctgacgcatgggtcgccggtgaatgtctccggc
cgctggttcaagccggtgagctatacggtgcgcaaggacgatcagcgcatcgatatggag
caggtcgccgcgctcgcccaggagcataagccgaagctcatcatcgccggcggctccggc
tattcccgcatctgggacttcgaaggcttccgcaagatcgccgacagcgttggcgcctat
ttcatggtggacatggcgcatttcgccggtctggtcgctgcgggacttcatccgtcgccg
ctgccgcatgcgcatgtcgtcaccaccacgacgcataagacgctgcgcggtccgcgcggc
ggcatggtgctgacgaacgacgaggccatcgccaagaaaatcaactcggcggtcttcccc
ggcctgcaaggtggtccgctgatgcatgtcatcgccggaaaggccgtggcgttcggcgag
gcgctgaccccgcagttcaagacctatcagcagcaggtcaaggacaatgcgcaaatgctc
gcgcagacgctcgtcgacgcgggccttgcgatcgtctcgggcggcaccgacaaccatctg
atgctcgtcgatctgcgtcccaagaagatcaccggcaaggcggccgaggccgcgcttggc
cgcgcgcacatcacctgtaataagaacggcattcccttcgatccggaaaagcccttcgtc
acctccggcatccgtctcggttcgccggcggcgacctcgcgcggcttcggccagaacgag
ttcaaacaggtcgggcagatgatcgtcgaggtgctcgacggcctctcctcgcagggcgaa
gaaggcaacgccgcgacggaagccgcggtgaaggaaaaggttcacacgctcaccgcgaag
ttcccgatctattaa
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