Methylocystis sp. SB2: LNB28_04195
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Entry
LNB28_04195 CDS
T10237
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mesz Methylocystis sp. SB2
Brite
KEGG Orthology (KO) [BR:
mesz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mesz03032
]
LNB28_04195 (topA)
03400 DNA repair and recombination proteins [BR:
mesz03400
]
LNB28_04195 (topA)
Enzymes [BR:
mesz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LNB28_04195 (topA)
DNA replication proteins [BR:
mesz03032
]
Prokaryotic type
DNA Topoisomerases
LNB28_04195 (topA)
DNA repair and recombination proteins [BR:
mesz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LNB28_04195 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_Crpt
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ULO24610
LinkDB
All DBs
Position
826549..829473
Genome browser
AA seq
974 aa
AA seq
DB search
MNVVIVESAAKAQTINKYLGKNFNVLACYGHVRDLPAKDGSVDPDQDFLMVWEMDAKGAK
RVAAIAEAVKGADKVILATDPDREGEAISWHLLDILNKKRVLKDKKIERVVFNAVTKSAI
QEAMAHPREIDQALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR
ELEIEKFVAREYWSLVAHLTTKAGEPFTARLVGADGKKISRLDIGAGQEAEDFKKALETA
AFVVRSVEAKPVKRHPYAPFTTSTLQQEASRKLGLAPAITMRIAQRLYEGVDIGGETAGL
ITYMRTDGVDMAPEAVASVRGVIGREYGERFVPKVPRKYTTKAKNAQEAHEAIRPTDPAR
LPKDVAKYLEPEQAKLYELIWTRTIASQMESAEMERTTVDIDAKAGARALELRATGQVVR
FPGFLELYQEGRDDGEDEDGGRLPAMAQGEPCTREKIDATQHFTEPPPRFTEATLVKRME
ELGIGRPSTYASTLAVLRDRDYVRIDKKRLVPEDKGRLVVAFLESFFSRYVEFDFTADLE
EKLDLVSNNEIDWKQVLRDFWKDFSAAVDGTKDLRVSEVLDSLNELLGPHVFPSKEDGSD
PRLCPACNSGQLSLKIGKFGAFVGCSNYPECRYTRTLSPPTGDAADAARPGVKVLGVNPE
TGAEVTLRDGRFGAYVQEGEQEEGGEKPKRASLPKSIRPDDLTLMQAIALLALPREVAKH
PTSGDPIVAGIGRFGPYVQHGKTYANIGRDDDVLSIGANRAIDLIVQKESGGGGSRFSRG
PAEPARVLGDHPQGGSVTVKAGRFGPYVNWGKINATIPRAIDQASLTLEQALELLAEKAA
GGGGATGGGGRLLGEHPEGGKVTVRPGRFGAYVNWGKINATLSKGASAEEVTLEEALQLI
EAKGGAPKKSAKKAPAKKAAGKKAPTNAKKKIEDSDEAPFDESQPVNVAPTVAKKPAAKK
APAKKLATKKAAAK
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtcgtcatcgtcgaatcagcggccaaagcgcagacgatcaacaaatatttaggc
aagaatttcaatgtgttggcctgctatggccatgttcgcgaccttcccgccaaggacgga
tcggtcgaccccgaccaggattttcttatggtctgggaaatggacgccaagggtgcaaag
cgcgtcgccgccatcgccgaggcggtgaagggcgccgacaaagtcatcctcgcgaccgac
cccgaccgtgagggagaggccatctcctggcacttgctcgacattttgaataagaagcgc
gtgctcaaggataagaagatcgagcgcgtcgtcttcaatgcggtcaccaagtcggcgatc
caagaagcgatggcgcatccgcgcgaaatcgatcaggcgctggtcgacgcctatctcgcc
cgccgcgcgctcgactatctcgtgggcttcaccctgtcgccggtgctgtggcgtaagctc
cccggcgcccgttcggccggccgcgtgcaatctgtcgcgcttcgcctcgtctgcgaccgc
gagctcgaaatcgagaaattcgtcgcacgcgaatattggtcgctcgtcgcccatctgacg
accaaggcgggcgagcccttcacggcgcgcctcgtcggcgctgacggcaagaagatttcg
cggctcgacatcggcgcgggtcaggaggccgaggacttcaagaaggcgctggagaccgcc
gccttcgttgtgcgctcggtcgaggcgaaacccgtcaagcgccacccttacgcgcccttc
acgacctccactttgcagcaggaggcttcacgaaagctcggcctcgcgccggcgatcacc
atgcgcatcgcccagcggctctatgaaggcgtcgacattggcggcgagacggcgggtctc
attacttatatgcgaaccgacggcgtcgacatggcgcccgaggcggtcgccagcgtgcgc
ggcgtgatcggacgggaatatggcgagcgtttcgttcccaaggttccgcgcaaatatacg
acgaaggccaagaacgcgcaggaagcccatgaggcgatccgcccgacagatcccgcgcga
ttgcccaaggatgtggccaaatatctcgaacccgagcaggccaagctctatgagctgatc
tggacgcgcaccatcgccagccagatggagtcggccgagatggagcgaaccaccgtcgac
atcgacgccaaagccggcgcccgcgcgctggagctgcgcgcgacgggtcaagtcgttcgt
ttcccgggcttccttgagctctatcaggaaggccgcgacgacggagaggacgaggacggc
ggtcgcctgccggcgatggcgcagggtgagccctgcacgcgcgaaaaaatcgacgccacc
cagcatttcaccgagccgccgccgcgcttcacggaagcgactctggtcaagcgcatggag
gagctcggcatcgggcggccttcgacctacgcctcgacgctcgccgtgctgcgcgaccgc
gactatgtgcggatcgataagaagcgcctcgtgcccgaggacaagggacgcctcgtcgtc
gccttcctcgaaagcttcttctcgcgctacgtcgaattcgacttcaccgcagacctcgaa
gaaaagctcgatctcgtctccaataatgagatcgactggaagcaggtgctgcgggatttc
tggaaagatttctcggcggccgtcgacggcaccaaggatctgcgggtcagcgaggtgctc
gacagcctcaacgagctgctgggcccgcatgtcttcccctcaaaggaggacggaagcgat
ccgcgcctctgccccgcctgcaacagcggtcagctctcgctcaagatcggcaagttcggc
gccttcgtcggctgctccaactatcccgaatgccgctacacgcgaaccctgtcgccgccg
acgggcgacgccgccgacgcggcgagaccgggcgtcaaggtcctgggcgtcaatcccgag
acgggcgcggaagtcacgctgcgggatggccgcttcggcgcctatgtgcaggaaggcgag
caggaagaaggcggcgaaaagcccaaacgcgcgtcgctccccaagagcatcaggcctgac
gatctgacgctgatgcaggccatcgctctgctcgcgctgccgcgcgaagtcgcgaaacat
ccgacgagcggcgatccgatcgtcgccggcatcgggcgcttcgggccctatgtccagcac
ggcaagacctacgccaatatcggccgcgacgacgacgtgctgagcattggcgccaaccgc
gccatcgatctcatcgtgcagaaggagtcgggcggcggcggctcccgtttctcgcgcggc
ccggcggagccggcgcgcgtgctgggcgatcacccccagggcggatcggtgaccgtcaaa
gctggccgtttcggtccttatgtgaactggggcaagatcaatgcgacgatcccgcgcgcc
atcgatcaggcgtcgctgacgctcgaacaggcgctcgagcttctcgccgagaaggctgcc
ggcggcggcggcgcgacgggcggcgggggacgcttgctgggcgagcatcccgagggcggc
aaggtcacggtgcgccccggccgcttcggcgcttacgtcaactggggcaagatcaacgcg
acgctgtccaagggcgcttcggccgaggaggtgactctcgaagaggccctgcaactgatc
gaagccaagggcggcgcgccgaagaaatcggcgaaaaaagcgccggccaagaaagcggcc
ggtaagaaggcgccgaccaacgccaagaagaaaatcgaagacagcgacgaggcgcctttt
gatgaatcgcagcccgtgaacgtcgcgccgaccgtcgcaaagaaacctgcagccaagaag
gcgcccgccaaaaagctggcgacgaaaaaagctgcggcgaagtag
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