Methylocystis sp. SB2: LNB28_05395
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Entry
LNB28_05395 CDS
T10237
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mesz Methylocystis sp. SB2
Pathway
mesz03020
RNA polymerase
Brite
Enzymes [BR:
mesz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LNB28_05395 (rpoC)
Transcription machinery [BR:
mesz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LNB28_05395 (rpoC)
DNA repair and recombination proteins [BR:
mesz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LNB28_05395 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
ULO24830
LinkDB
All DBs
Position
1079560..1083738
Genome browser
AA seq
1392 aa
AA seq
DB search
MNQQEVMNLFNPVVATQAFDQIQISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHISLAAPVAHIWFLK
SLPSRIGLLLDMTLKDLERILYFESYIVLDAGLTPLKERQLLSEDEYVRAQDEYGQDTFT
AMIGAEAIRKLLESMDLEAIAASLRIEISEAKTELKPKKLAKRLKIIEAFLQSGNRPEWM
ILKEVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR
MLQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVV
GPELKLHQCGLPKKMALELFKPFIYSRLDAKGYSATVKQAKKLVEKEKPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLTLERDGEPGQGMAFSSQGEIEHAI
AAKAVTLHTKIKGRAWTYDEKGKRVSKIFDTTPGRMMLGQLMPRHDKIPFDVVNRLMTKK
EISNMIDTVYRNCGQKETVIFCDRIMSLGFREAFKAGISFGKDDMVVPENKEAIVSETRA
AAKEYEQQYNDGLITQGEKYNKVVDAWMKCTDKLAEEMMQRISSVSKDEHGRDMPINSIY
MMSHSGARGSPQQMKQLAAMRGLMAKPSGEIIESPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIISSTDCGSQNGIRMRAIIDAGQVVASLTSRILGRT
AAEALMSQDGKTVIVPAGEMIQEQHIDAINAAGIQEVKIRSVLTCEAKNGVCGKCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLADQSFIESNFEGKVHVRNRH
LARNSDGDLIVMARNVAIVILGPNGEERAVNRLLYGAKMKVDEGDKVKRGQRLAEWDPYT
RPIISEVDGVIGFEELVEGQSMSETVDESTGITKRMVMDYRLNLRSASLKPSILIKGADG
KIVKLARGGDARYLLPVDSIIAVEPGGTVKAGDIVARISVESAKTRDITGGLPRVAELFE
ARRPKDHAIIAEISGTVAFGKDYKNKQRITITPTEEGADPVEYLIPKGKHIHLQDGDVVE
KGDYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVNINDKHIEVIVRQMLQKID
IVDPGDTGFLEGEQVDKLELEEANAKALENGGKPATGTPVLLGITKASLQTRSFFSAASF
QETTRVLTEAAVNGKIDPLVGLKENVIVGRLIPAGTGAAMSKFRAVAGGRDELIIEQRAE
TAEPAPALPPAE
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagcaagaggtcatgaatctcttcaatccggtcgtggcgacgcaggccttcgac
cagattcagatttcgatcgcaagcccggagaagattctttcctggtcttacggcgagatc
aaaaagcccgagacgatcaactaccgcacgttcaagccagagcgcgacggactattctgc
gcgcgcatcttcggtccgatcaaggactatgagtgcctgtgcggcaaatacaagcggatg
aaatacaagggcgtcatttgtgaaaagtgcggcgtcgaggtcaccctcgcgcgcgtgcgg
cgtgaccgcatgggccacatctcgctcgccgcgcccgtcgcgcacatttggtttctgaag
tcgctgccctcgcgcatcggcctgttgctcgacatgacgctcaaggatcttgagcgaatc
ctctatttcgagtcgtatatcgtcctcgacgcgggcctgacgccgctcaaagagcgtcag
ttgctgtcggaagacgaatatgtgcgcgcgcaagacgaatatggccaagacacgttcacg
gccatgatcggcgcggaagcgatccgcaaacttcttgagtcgatggacctggaagcgatc
gccgcgtcgctgcgcatcgagatctccgaagcgaagaccgagctcaagcccaagaagctg
gccaagcgcctcaagatcatcgaggccttcctccagtcgggcaatcgccccgaatggatg
atcctcaaggaagttccggtcattccgccggatctgcgtccgctcgtgccgctggacggc
ggccgcttcgcgacatcggatctgaacgatctctaccgccgcgtcatcaaccgcaacaat
cgtctgaagcggctgatcgaattgcgcgcgccggacatcatcatccgtaacgagaagcgc
atgttgcaggaggccgtcgacgcgctgttcgacaacggccgccgcggacgcgtgatcacg
ggcgccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgc
ttccgccagaacctgctcggcaagcgcgtcgattattccggccgttcggtgatcgtcgtc
ggtccggagctgaagctgcatcagtgcggcctgcccaagaagatggcgctcgagctgttc
aagcccttcatctattcgcgtctcgacgccaagggctattcggcgaccgtcaagcaggcg
aagaagctcgtcgaaaaggaaaagccggaagtctgggacatcctcgacgaggtcattcgc
gagcatccggtgctgctgaatcgcgcgcccactctgcaccgtctcggcattcaggcgttc
gagcccgtgctgatcgagggcaaggcgatccagctgcatccgctcgtctgcgccgccttc
aacgccgacttcgacggcgaccagatggccgttcacgtgccgctgtcgcttgaagcgcag
ctcgaagcgcgcgtgctgatgatgtcgacgaacaacatcttgcacccggccaatggtcag
ccgatcatcgtgccgtcgcaggatatcgttctcggcctctattatctcacgcttgagcgc
gacggcgaacccggacagggcatggctttctcgagccagggcgagattgagcacgcgatc
gccgccaaggcggtcacgctccacaccaagatcaagggccgcgcctggacctatgatgaa
aagggcaagcgcgtatcgaagattttcgacacgacgcccggccgcatgatgctcggccag
ctcatgccgagacatgacaagattcccttcgacgtcgtcaacagactgatgaccaagaag
gaaatctcgaacatgatcgacaccgtctaccgcaactgcggtcagaaggagacggtcatc
ttctgcgatcgcatcatgtcgcttggcttccgcgaagccttcaaggcgggaatctccttc
ggcaaggacgacatggtcgtgccggaaaacaaggaggcgatcgtctccgagacgcgcgcg
gcggccaaggaatatgagcagcaatataacgacggcctgatcactcagggcgaaaaatac
aacaaggtcgtcgacgcctggatgaagtgcaccgacaagctcgctgaggagatgatgcag
cgcatctcgtcggtgagcaaagacgagcacggccgcgacatgccgatcaactcgatctat
atgatgtcgcattccggcgcgcgcggctcgccgcagcagatgaagcagctcgccgcgatg
cgcggactgatggccaagccctcgggcgagatcatcgagagcccgatcatctcgaacttc
aaggaaggcctcaccgtccttgaatacttcaactccacgcacggcgcccgcaagggtctc
gccgacacggcgttgaagacggcgaactcgggctatctcacgcgacgcctcgttgacgtt
gcgcaagattccatcatctcgtcgaccgactgcggctcccagaacggcatccgcatgcgc
gcgatcatcgacgcgggacaggtcgtcgcctcgctgacatcacgcatcctcggccgcacg
gcggcggaggctctgatgtcgcaggacggcaagaccgtgattgtgcctgccggcgagatg
atccaggagcagcacatcgacgcgatcaacgccgccggcattcaggaggtgaagatccgc
tcggtcctgacctgcgaggccaagaacggcgtctgcggcaagtgctatggacgcgatctc
gcgcgcggcacgcccgtcaatatgggcgaagccgtcggcgtcatcgcggcgcagtcgatc
ggcgaaccgggcacgcagctcaccatgcgcaccttccatatcggcggcgcggcgcagctg
gctgaccagtcgttcatcgagtcgaacttcgagggcaaggtgcatgtgcgcaatcgccat
ctcgcccgcaactcggacggcgatctcatcgtcatggcgcgtaacgtcgccatcgtgatc
ctcggcccgaatggcgaagagcgggcggtgaaccgcctcctctatggcgccaagatgaag
gtcgacgagggcgacaaggtgaagcgcggccagcgactggccgagtgggacccctacacg
cgtccgatcatcagcgaagtcgacggcgtcatcggcttcgaggaactcgtcgaagggcag
tcgatgtcggagacggtcgacgaatcgaccggcatcaccaagcgcatggtcatggactac
cgcctcaacctgcgttcggcgagcctgaagccctcgatcctgatcaaaggcgccgatggc
aagatcgtcaagctggcccgcggcggcgacgctcggtatttgctgcccgtcgactcgatc
atcgccgtcgaacccggcggcacggtgaaggccggcgacattgtcgcgcgtatttcggtg
gagagcgccaagacccgcgacatcaccggcggtctgccgcgcgtcgcggagcttttcgag
gcgcgccgtccgaaagatcacgcgatcatcgccgaaatctccggcacggtcgccttcggc
aaggactataagaacaagcagcgcatcaccatcacgccgaccgaggaaggcgcggatccg
gtcgaatatctgatcccgaagggcaagcatatccatcttcaggatggcgacgtcgtggag
aagggcgattacatcgtcgacggcaatccggcgccgcatgacattctggcgatcaagggc
gtggaggagcttgcagcttacctcgtcaacgagatccaggaggtctaccggctgcagggc
gtcaacatcaacgacaagcacatcgaagtgatcgtgcgtcagatgttgcagaagatcgac
atcgtcgatccgggcgacaccggcttcctcgaaggcgagcaggtcgacaagctggagctc
gaagaggcgaacgccaaggcgctcgagaatggcggcaagcctgcgacaggcacgccggtg
cttctcggcatcaccaaggcttcgctgcagacgcgctccttcttctcggccgcctccttc
caggagacgacccgcgtcctcaccgaggccgccgtcaacggcaagatcgatccgctggtc
ggactcaaggagaacgtcatcgttggccggctcattccggccggcaccggcgctgcgatg
tccaagttccgcgccgtcgcgggcgggcgcgacgaactcattatcgagcagcgcgccgaa
accgctgaacctgcgccggcgctgccgccggcggagtga
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