Methylocystis sp. SB2: LNB28_06235
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Entry
LNB28_06235 CDS
T10237
Symbol
fdhF
Name
(GenBank) formate dehydrogenase subunit alpha
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
mesz Methylocystis sp. SB2
Pathway
mesz00630
Glyoxylate and dicarboxylate metabolism
mesz00680
Methane metabolism
mesz01100
Metabolic pathways
mesz01120
Microbial metabolism in diverse environments
mesz01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
mesz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
LNB28_06235 (fdhF)
09102 Energy metabolism
00680 Methane metabolism
LNB28_06235 (fdhF)
Enzymes [BR:
mesz01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
LNB28_06235 (fdhF)
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Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Molydop_binding
Fer2_4
NADH-G_4Fe-4S_3
Molybdop_Fe4S4
Fer4_7
Fer4_21
Fer4
Fer4_Nqo3
Fer4_10
Fer4_9
Fer4_8
Fer4_6
Fer4_15
Fer4_2
Fer4_16
Fer4_4
TPP_enzyme_M
Fer4_NDSU1
LdpA_Fe-S-bd
Motif
Other DBs
NCBI-ProteinID:
ULO24989
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Position
complement(1264603..1267482)
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AA seq
959 aa
AA seq
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MTLIKEIDYGTPESLSVKSVTLTIDGKSVTVPEGTSIMRAAMQVGTEIPKLCATDSIKAF
GSCRLCVIEVEGRNGTPASCTTPVAPGISVKTQTPRLAAIRRGVMELYISDHPLDCLTCA
ANGDCELQDMAGAVGLRDVRYGYDGANHVFARNNGEVNFDWKPKDESNPYFTFDSSKCIV
CNRCVRACEEVQGTFALTISGRGFESRVSAGMDEAFMESECVSCGACVQACPTATLIEKS
VVAVGQPEHSEVTTCAYCGVGCTFKAEMRGEEVVRMIPWKDGKANHGHSCVKGRFAYGYA
HHGDRVLDPMIRESIDQPWRVVSWDEAIGFAADRLKAAQEKYGKNAVGVITSSRCTNEES
YLVQKLARQGFLNNNTDTCARVCHSPTGYGLAQAFGTSAGTQDFDSVDDADVILVIGANP
TDAHPVFGSRMKKRLREGAKLIVIDPRRIDLVRSPHVEADYHLPLKPGTNVAMVTALAHV
IVKENLVNLDFVKARCDWDEYQDWAAFVADDRYSPEALESVLGVPAADIRGAARLYATGG
NGAIYYGLGVTEHSQGSTTVMGIANLAMATGNLGRRGVGVNPLRGQNNVQGSCDMGSFPH
ELPGYRHISNDAARQAFEKDWGVSLDPEPGLRIPNMFDAAIEGTFKGLYVQGEDILQSDP
DTRHVSRALANMEIVIVQDLFLVETANYAHVFLPGATFLEKDGTFTNAERRIQRVTKVMS
PKNGYADWEVTQLLANKLGLNWNYANASEIMDEIARLTPSFAGVSFKHLAEAGSLQWPVN
DDSPEGMPIMHINGFARGKGKFVITEYVPTEEKVGPRFPLLLTTGRILSQYNVGAQTRRT
ENSQWHPEDILEIHPHDAEDRGVREGDWVKVASRAGETTLRAKLTDRVAPGVVYTTFHHP
NTQANVVTTDNSDWATNCPEYKVTAVQVSTTNGPTDWQHQYRELTEQSRRIASTIDAAE
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgacgcttatcaaagaaatcgattacggcacgcctgagtccctatccgtaaagtcggtc
acgctgaccattgacgggaagagcgtcaccgtgccggagggcacgtcgatcatgcgcgcg
gcgatgcaggtcggcacggagatcccgaagctctgcgccaccgacagcatcaaggcgttt
ggctcctgccggctctgcgtcatcgaggtcgagggccgcaacggcacgccggcctcctgc
acgacgccggttgcgcccggcatctccgtcaagacgcagaccccgcgcctcgccgcgatc
cgccgcggcgtgatggagctttatatttccgaccatccgctcgactgcctgacctgcgcg
gccaatggcgactgcgaactgcaggacatggcgggcgcggtgggcctgcgcgacgtccgc
tatggctatgacggcgccaatcatgtcttcgcccgcaacaatggcgaagtgaatttcgac
tggaagccgaaggacgaatcgaacccctacttcaccttcgactcgtcgaaatgcatcgtc
tgtaaccgctgcgtgcgcgcctgcgaggaagtgcagggcaccttcgcgctgacgatatcg
ggccgcggtttcgaatcgcgcgtttccgccggcatggacgaagctttcatggagtcggaa
tgcgtgtcctgcggcgcctgcgttcaggcctgcccgaccgcgacgctgatcgagaagtcg
gtggtcgccgtcggtcagccggagcattccgaggtcacgacctgcgcctattgcggcgtc
ggctgcactttcaaggcggagatgcgcggcgaggaagtcgtccgcatgattccctggaaa
gacggcaaggccaaccatggccatagctgcgtcaagggccgcttcgcctacggctacgcc
catcacggcgaccgagttcttgatccgatgatccgcgagtcgatcgatcagccctggcgc
gtcgtctcgtgggatgaagcgatcggcttcgcggccgacaggctgaaagcggcgcaagag
aaatacggaaagaacgccgtcggcgtgatcacctcgtcgcgctgcaccaatgaggagagc
tacctcgttcagaagctcgcgcgtcaaggtttcctcaacaacaacaccgacacctgcgcg
cgcgtctgccattcgccgacgggttacggactggcgcaggccttcggcacttccgccggc
acgcaggatttcgactcggtcgacgacgccgacgtcattctggtcatcggcgccaatccg
accgacgcgcatccggtgttcggttcgcgcatgaagaagcgcctgcgcgagggcgccaag
ctgatcgtcatcgatccgcgccgcatcgacctcgtgcgctcgcctcatgtcgaggccgac
tatcaccttccgctgaagccgggcaccaatgtcgcgatggtcacggcgctggcgcatgtg
atcgtcaaggaaaacctcgtcaatctcgacttcgtcaaagcgcgctgcgactgggacgaa
tatcaggactgggccgccttcgtcgccgacgaccgctacagccccgaggcgcttgaaagc
gtgctgggcgtgccggccgccgacattcgcggcgctgcgcgtctctacgccaccggcggc
aacggggcgatttactacggcctcggcgtgacggagcatagccaaggctccaccaccgtc
atgggcatcgccaatctcgccatggcgaccggcaatctcggccgccgcggcgtcggcgtg
aacccgctgcgcggtcagaacaatgtgcagggctcctgcgacatgggctcgttcccgcac
gagctgccgggctatcgccacatctccaacgatgcggcgcgtcaggcgttcgagaaggac
tggggcgtttcgctcgacccggagccgggcctgcgcattcccaacatgttcgacgcggcg
atcgaaggcaccttcaaggggctttacgttcagggcgaggacattctgcagtccgacccc
gacacgcgtcacgtgtcgcgcgcgctggcgaacatggaaatcgtcatcgtgcaggatctc
ttcctggtcgagacggcgaactacgcgcatgtcttcctgccgggcgcgaccttccttgag
aaggacggcaccttcaccaacgccgagcgccgcatccagcgcgtcaccaaggtgatgtcg
ccgaagaacggctacgcggactgggaagtcacccagctgctcgccaacaagctgggactt
aattggaactacgccaacgccagcgagatcatggacgagatcgcgcggctgacgccgtcc
ttcgcaggcgtgtcgttcaagcatctcgccgaggccggttcgctgcaatggccggtcaat
gacgactcgcctgagggcatgccgatcatgcacatcaacggttttgcgcgcggcaaaggc
aaattcgtcatcaccgaatatgtgccgaccgaggagaaggtggggccgcgcttcccgttg
ctgctcacgaccggccgcatcctgtcgcagtacaatgtcggcgcgcaaacgcgacgcacc
gagaacagccagtggcatcctgaggacatcctcgagatccacccgcacgacgcagaagat
cgcggcgtgcgtgaaggcgactgggtgaaggtggcgagccgcgccggcgagacgacgctg
cgcgccaagctcacggatcgcgtggcgccgggcgtcgtctatacgacgttccatcatccg
aacactcaggccaatgtggtcacgaccgacaattccgactgggccaccaattgtcccgaa
tacaaggtgacggcggttcaggtctcgaccaccaacgggccgaccgactggcagcatcaa
tatcgcgagctgacggagcagagccgtcgcatcgcgagcacgatcgacgcggcggaatga
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