Methylocystis sp. SB2: LNB28_06665
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Entry
LNB28_06665 CDS
T10237
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mesz Methylocystis sp. SB2
Pathway
mesz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mesz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LNB28_06665 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesz03021
]
LNB28_06665 (rpoD)
Transcription machinery [BR:
mesz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LNB28_06665 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Phage_DsbA
MTR4-like_stalk
Motif
Other DBs
NCBI-ProteinID:
ULO25064
LinkDB
All DBs
Position
1353298..1355313
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AA seq
671 aa
AA seq
DB search
MAKKDETKVENETVAATEASDGPLLDLNDAAVKRMIKLAKKRGFVTYAELNAVLPSEEVS
SDQIEDVYAMLSEMGITVSEGDDPDDVEAEEQSPEEEEPEGGELVETPRATAVATRTSEP
ADRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWREE
LEAGKVLLRDIIDLEATYAGPEGKATKTAEPAPAADLAPATAPRTPPAGLQEDVAPPEES
FEEEDDMENSVSLSAMELELKPKVLETFARIADAYKKLRRLQDQNVENKLKNETLTPAQE
RKYKTLKKEIVADVKSLSLNQNRIEALVEQLYDINKRLIGYETKLLRLADSHGVMREDFI
DKFHGSELDPKWVMRVAKLGSKGWREFVAADKDRIKDLRGDIHALATETGLEISEFRKIV
HMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEE
LSEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIEAAIQSNLRE
TTTRVLSSLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPS
RSRKLRSFLDN
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaagacgaaactaaggtcgagaacgaaaccgtagcggccacggaggcttcc
gacggaccgcttctcgatctcaacgatgccgccgtcaagcggatgatcaagctcgcgaaa
aaacgcggcttcgtcacctatgccgagctgaacgcggtgctgccgtccgaggaagtgtcg
tcggatcagatcgaggacgtctacgcgatgctctcggaaatgggcatcaccgtctctgag
ggcgacgacccggacgacgtcgaggccgaagaacaaagccccgaggaagaagaaccggaa
ggcggcgaactcgtcgagaccccgcgcgcgaccgccgtggcgacgcgcacgtcggagccc
gccgatcgcaccgacgaccccgtgcgcatgtatctgcgcgagatgggctcggtcgaactt
ctgtcgcgcgaaggcgaaatcgccatcgccaagcgcatcgaggccggacgcgaggcgatg
atcgccgggctctgcgagagcccgctgaccttccaggccatcatcatttggcgcgaggaa
ttggaggcgggcaaagtcctgctgcgcgacatcatcgatcttgaggcgacctacgccggc
cccgaaggcaaggcgacgaagaccgctgagccggcgcccgccgccgacctagcgcccgcg
accgcgccgcgcaccccgcccgccggtctgcaggaggacgtcgcgccccccgaagaatct
ttcgaggaagaagacgacatggaaaattccgtgtcgctctcggcgatggaattggaactg
aagccgaaagtcctcgaaaccttcgcgcgcatcgccgacgcctataagaagctgcgccgg
ctccaggaccagaacgtcgagaacaagctcaagaacgagaccctgacgcccgcgcaggag
cgcaaatataagacgctcaagaaggaaatcgtcgccgacgtcaaatcgctgtcgctgaac
cagaaccgcatcgaagcgctggttgagcagctctacgacatcaataagcgactcatcggc
tatgagacgaagctcctacggctcgccgacagccacggcgtgatgcgcgaagacttcatc
gacaagttccacggctcggagctcgaccccaaatgggtcatgcgcgtcgccaagctcggc
tccaagggctggagggagttcgtcgccgccgacaaggatcgcatcaaggatctgcgcggc
gacattcatgcgcttgcgaccgagacgggactggagatctccgagttccgcaagatcgtg
catatggtgcagaagggcgagcgcgaagcccggcaggcgaaaaaggaaatggtcgaggcg
aatctgcgtctcgtgatttcgatcgccaagaaatacaccaatcgcggcctgcaattcctc
gacctcatccaggaaggcaatattggcctgatgaaggccgtcgataaattcgagtatcgc
cgcggctataaattctcgacctatgcgacatggtggattcgtcaggcgatcacccgctcg
atcgccgaccaggcgcgcaccatccgcattcccgtgcatatgatcgagacgatcaacaag
atcgtgcggacctcgcgccagatgctgcatgagatcggacgcgagccgacgcccgaggaa
ctttccgaaaagctcgccatgccgctcgagaaagtgcgcaaagttttgaaaatcgccaag
gagccgatctcgctcgaaacgccgatcggcgacgaggaggattcgcatcttggggatttc
atcgaggataagaacgcggtgctgccgatcgaggcggcgatccagtcgaatctgcgcgag
acgacgacgcgcgtcctctcctcgctgacgccgcgcgaggaacgcgtgctgcgcatgcgc
tttggcatcggcatgaacaccgaccacacgctcgaagaagtcggccagcagttctcggtg
acgcgcgagcgcatccgccagatcgaggcgaaggcgctgcgcaaactgaagcatccgtcg
cggagccggaaactgcggagcttcttggataattga
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