Methylocystis sp. SB2: LNB28_09875
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Entry
LNB28_09875 CDS
T10237
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mesz Methylocystis sp. SB2
Pathway
mesz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNB28_09875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesz03019
]
LNB28_09875
03400 DNA repair and recombination proteins [BR:
mesz03400
]
LNB28_09875
Enzymes [BR:
mesz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LNB28_09875
Messenger RNA biogenesis [BR:
mesz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LNB28_09875
DNA repair and recombination proteins [BR:
mesz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LNB28_09875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
B_lactamase-like_C
Motif
Other DBs
NCBI-ProteinID:
ULO22502
LinkDB
All DBs
Position
complement(2008171..2009748)
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AA seq
525 aa
AA seq
DB search
MTELSAQELLRSIFGFSDFLPGQTEVVESVLAGRDVIAIMPTGSGKSLLYQLPAAAPGGG
LVLVCSPLIALMRDQLRTLADTGIGAVALHSMQEDDEAAAAIDAVASGRAKLLYAAPERL
AQDGTQNLLRSIRIKLFAVDEAHCVSHWGHEFRPDYRALGEIARKLGAPPMLAVTATAGP
RTRDDIARTLFARPPQIFQRSFARPNLSLDFAQKRAGLRQIVDFARKGRDAGKESGIIYC
NSRNKTDALARELSRLGFDALPYHAGLDAHTRAESQDAFFTRKGAVMVATIAFGMGVDKP
DVRFIVHADLPTSVEGYYQEIGRAGRDGAPARALTLFSPAELALRWRVPDAAQDNDAAAG
DYARRQAMARLAATPSCRFQRLLAEFGEESGPCGRCDHCRGGPLAWPRRLSSLALGWRAA
LASGFAARADISEDDADLPELTPAPIDAPKRQEEPPLTVAEERLLRALEAERLAIAKRRG
LAPRTVASEQALRTLARERPQSAHDPLLRGLEEPAALLRVIREAL
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgacggagctgtccgcgcaagaattgctgcgcagcattttcggcttttcggactttctg
ccggggcagacggaggtcgtcgagagcgtgctcgctgggcgcgacgtcatcgccatcatg
ccgacgggctccggcaaatcgctcctctatcagctgccggccgccgctccgggcggcggg
ctcgttctcgtctgttcgccgctgatcgcgctgatgcgcgaccagcttcgaaccctcgcc
gacactgggattggcgccgtcgcgctccactccatgcaggaggacgacgaagcggcggcc
gccatcgacgccgtcgcgtcgggtcgggcgaagctgctttacgccgcccccgaacgtctt
gcccaggacggaacgcagaatttattgcgcagcattcgcataaaactcttcgcggtcgat
gaggcgcattgcgtctcgcattggggccatgagtttcgccccgactatcgcgcgctcggc
gagattgcgcgaaagctcggcgcgccgccgatgctcgccgtcaccgcgacggccggtccg
cgcacccgcgacgacatcgcccgcacgctgtttgcgcggcccccgcagattttccagcgc
tccttcgcgcggccgaatctctccctcgatttcgcgcagaagcgcgccggcctgcggcag
atcgtcgatttcgcgcgcaaaggccgcgacgccggcaaggaaagcggcatcatttattgc
aactcgcgcaacaagaccgacgcgctcgcccgcgagctctcgcggctcggcttcgatgcg
ctgccctatcacgccgggctcgacgcccacacgcgcgcggagagccaggacgctttcttt
acccgcaagggcgcggtgatggtggcgactatcgccttcggcatgggcgtcgataagccg
gacgtgcgctttatcgttcacgccgatctgccgacctcggtcgaaggctattatcaggag
atcggccgcgccggccgcgatggcgccccggcccgcgcgctgacgctgttctcgcccgcg
gagctggcgctgcgctggcgcgttccggatgcggcgcaagacaatgacgcggccgccggc
gactacgccagacgccaggcgatggcgcggcttgccgccacgccgagctgccgctttcag
cgcctcctcgcggaattcggcgaagagagcgggccctgcggccgatgcgatcattgccgc
ggcggaccgctggcgtggccccggcgactatcgtcccttgcgctcggttggcgcgccgcg
ctcgccagcggcttcgccgcgcgcgccgacatttcggaagacgacgccgatctgcctgag
ctcacgccagcgccgatcgacgcgccgaagcggcaggaagaaccgccgctgaccgtggcc
gaggagcgccttctgcgcgcgcttgaggccgagcggctcgccatcgccaaacggcgcggc
ttggcgccgcgaactgtggcctccgaacaggcgctgcgcaccctggcgcgcgaaaggccg
caaagcgcccacgacccgctgctgcgcgggctcgaagagccggcggcgctgctgcgggtg
atccgcgaagccctctaa
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