Methylocystis sp. SB2: LNB28_12830
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Entry
LNB28_12830 CDS
T10237
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mesz Methylocystis sp. SB2
Pathway
mesz03420
Nucleotide excision repair
mesz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mesz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LNB28_12830
03430 Mismatch repair
LNB28_12830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesz03400
]
LNB28_12830
Enzymes [BR:
mesz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LNB28_12830
DNA repair and recombination proteins [BR:
mesz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LNB28_12830
MMR (mismatch excision repair)
Other MMR factors
LNB28_12830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
DUF3553
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
ULO23038
LinkDB
All DBs
Position
complement(2596145..2598505)
Genome browser
AA seq
786 aa
AA seq
DB search
MKSPPPEIDDYAPQTGGLAARAAASAGRPRYLDALNPEQRAAVETLDGPVLVLAGAGTGK
TRALTTRIGHILALGKARAYEILAVTFTNKAAREMRQRVEALVGEGAQAMQWLGTFHAIS
AKILRRHAELVGLKPNFTILDVDDQIRLLKQVLRAENIDDKRWPARALAMRIDGWKNRGL
TPAQVPAGDAESFANGKGAALYALYQERLKVLNAVDFGDLLMESLRLFRDNPDVLADYQR
RFKYILVDEYQDTNIAQYLWLRLISQRAPGKQNLCCVGDDDQSVYGWRGAEVENILRFEQ
DFPGAKVIRLERNYRSTGHILAAASHLISHNEGRLGKTLFTDGGEGEKPTLTGVWDSQEE
ARSIGEDIEQLSRKDHSLEEIAILVRASFQMREFEERFVEIGLPYRVIGGPRFYERLEIR
DALAYLRCVAQPADDLAFERIINTPKRGLGDATLQMLHEYARREAIPLMQAARVLVESEE
LKPKPRGALRGLIGDLDRWRTLIDSKPQHELAEQVLDESGYTEMWRSDKTPEATGRLDNL
KELVRAMEAFPDLESFLEHVSLVMEADSAVDQERVSIMTLHGAKGLEFETVYLPGWEEGL
FPSQRTLDEQGRAGLEEERRLAYVGLTRAKRRAKIYFASNRRIHGLWQATVPSRFIDNLP
TGNVEVVEAPSGSQYGSYGVSRFANLDVYGSDYSTPGWKRAQAARSDSARTGAARESHGA
RGKQPVTIEGEVIARSSGGSRFVVGARVFHLKFGPGSVAAVDGNKLTVDFDKAGRKMVLE
SFVEAG
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgaagagccctccgcccgagatcgacgattacgcgccgcagacgggcgggcttgccgcg
cgcgccgcggcgagcgcgggacggccgcgctatctcgacgcgctcaatcccgagcagcgc
gccgccgtcgaaacgctcgacgggccggtgctcgtgctcgccggcgccggcaccggcaag
acgcgcgcgctgacgacgcgcatcggccacatcctcgcgctcggcaaggcgcgcgcctat
gaaatcctcgccgtcaccttcaccaataaggcggcgcgcgagatgcgccagcgcgtggaa
gccctcgtcggcgaaggcgcgcaagccatgcaatggcttggcacctttcacgcgatcagc
gccaagatcctgcgccgtcacgccgaactcgtcgggctgaagcccaacttcaccattctc
gatgtcgacgatcagatccgcctcttgaagcaggtgctgcgcgcggagaacatcgacgac
aaacgctggccggcgcgcgcgctcgccatgcgcatcgacggttggaagaaccgcggcttg
acgccggcgcaggttcccgccggcgacgccgagagcttcgccaacggcaagggcgctgcg
ctttacgcgctctatcaggagcggctcaaggtcttgaacgccgtcgatttcggcgatctc
ttgatggagagtctgcggctctttcgcgacaatcccgatgtgctcgccgactatcagcgc
cgcttcaaatatattctggtcgacgaatatcaggacacgaatatcgctcaatatttgtgg
ctgcggctgatctcgcagcgggcgccggggaaacaaaatctctgctgcgtcggcgacgac
gatcagagcgtctatggctggcgcggcgccgaggtcgagaacatcctgcgtttcgagcag
gattttcccggcgccaaggtcatccgcctggagcgcaactaccgctcgaccggacatatt
ctcgccgccgcctcgcatctcatctcgcataatgaaggccggctcggcaaaacgctgttc
accgatggcggcgaaggcgagaagccgacgctcaccggcgtctgggacagccaggaagaa
gcgcgcagcatcggcgaggacatcgagcagctgagccgcaaggaccattcgctcgaagag
atcgccattcttgtgcgcgcgtcgtttcagatgcgcgaattcgaagagcgcttcgtcgag
atcggcctgccctatcgcgtcatcggcggcccgcgcttttacgagcggctcgaaattcgc
gacgcgctcgcctatctgcgctgcgtcgcgcagccggccgacgatctcgccttcgagcgc
atcatcaatacgcccaagcgcggcctcggcgacgcgacgctgcaaatgctgcatgaatat
gcgcggcgcgaagccattccgctgatgcaggcggcgcgcgtgcttgtcgaaagcgaggag
ctgaagccaaagccccgcggcgcgctgcgcggcctcatcggcgatctcgaccgctggcgc
acgctgatcgattcaaagccgcagcatgagcttgccgagcaggtgctcgatgaatccggc
tacaccgagatgtggcgttcggacaaaacgccagaggccaccgggcggctcgacaatttg
aaagagctcgtccgggcgatggaggcctttcccgacctcgagtccttcctcgaacatgtg
tcgctcgtcatggaggccgacagcgctgtcgatcaagagcgcgtgtcgatcatgacgctg
cacggcgccaagggcctcgagttcgaaaccgtttatctccccggctgggaggaagggctg
tttccaagccagcgcacgcttgatgaacagggacgcgccggcctcgaggaagagcgccgt
ctcgcctatgtcggcctgacgcgcgccaagcgccgcgccaagatctatttcgccagcaac
cgacgcattcacgggctgtggcaggcgaccgtgccgtcgcgcttcatcgacaatctgccg
acgggcaatgtcgaggtggtcgaagcgccgagcggttcgcaatatggctcctatggcgtc
tcgcgcttcgccaatctcgacgtctacggctccgactattcgacgccgggatggaagcgc
gcgcaagcggcgcgcagcgattccgcgcgcaccggcgcggcgcgcgagtcgcacggcgca
cgcggcaagcagcccgtgacgatcgagggcgaagtgatcgcgcgctcaagcggcggttcg
cgctttgtagtgggcgcgcgggtgtttcacttgaagttcgggcctggctcggtggcggcc
gtcgacggcaacaagctcacggtcgatttcgacaaggccggcaggaagatggtgctcgag
agttttgtagaggcagggtga
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