Methylocystis sp. SB2: LNB28_14355
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Entry
LNB28_14355 CDS
T10237
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mesz Methylocystis sp. SB2
Pathway
mesz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mesz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LNB28_14355 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesz03400
]
LNB28_14355 (mfd)
Enzymes [BR:
mesz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LNB28_14355 (mfd)
DNA repair and recombination proteins [BR:
mesz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LNB28_14355 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
AAA_16
AAA_25
SecA_DEAD
AAA_22
UB2H
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ULO23308
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All DBs
Position
2936876..2940412
Genome browser
AA seq
1178 aa
AA seq
DB search
MSAAATKLKKAAAGLQAARSGLVKGERLIFAHAPDGFDAFVSADLARALARESEGHAAVF
VHVARDGARSAAFRTALRFANPDVEILDIPGWDCQPYDRVSPHAGVVARRMTALSRLTRA
KSSSERPRVVTTTVDCLLQRVPPQRMVAAESFAAAPGNVVKLDELALWLESNGYLRASTV
RETGEYAQRGGIVDLYPPGLPAPIRLDFFGETLESIRSFDPDTQRATGQLRSLDLTPMSE
LRLTSETMRRFRQSYAARFGGQTRGDALYEAVSEGRRFHGMEHWLPLFYERMDTLFDYLG
EAPVVLDPLVEDAAAERVKQIEDYYDARKHAHDLDPAASNYKPLEPRALYLSLEEWRAAI
EGRAAAQFTPFAAHDGEKVIDCGARPGRDFAPERNTPDVNVFQAAADHVEALRDAGRTVV
VTGWSEGSCERLGHVLAEHGLPDLPRVASLPQALSKAVSIAVLGIEHGFETDAYAVLGEQ
DILGDRFVRRRRKRKPNENLLGEVAALAAGDLVVHVDHGIGRFIGLETISAAGAPHDCLE
LHYAGGDKLYLPVENIELLTRYGGEDAEAQLDRLGGAGWQSRKSRMKNRIREMAKGLIEI
AAQRQLREAPKLAPPEGLYDEFCARFPYDETEDQLAAIDATLDDLAAGRPMDRLVCGDVG
FGKTEVALRAAFCAAINGKQVAVVAPTTLLARQHYKTFTERFAGLPVRIGRLSRMVGAAE
TRETKKDLAEGRIEILIGTHAVLGKTVSFKDLGLVIIDEEQHFGVGHKERLKELRAEVHV
LTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAVRSFVSPFDSLIVREALLRERYRGGQ
AFFVCPRIEDLEEAAAFLRENVPESKFVLAHGQMSASELEDKMSAFCEGKFDILLSTTIV
ESGLDIPRANTLIVWRADMFGLAQLYQLRGRVGRAKLRAYALFTTPATRTITPQAQKRLD
VLQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGHIREVGYELYQQMLADAITLLKAGIE
EPQEEAWSPTIAIGAPVTIPEDYVADLTLRLQLYRRLSTLETDQDIEAFAAEMIDRFGPI
PPEVEQLLEIVAIKALCRRAHVEKIDAGPKGVIVAFREDKFANPAGLVRYVAEQRSSAKV
RPDMRVVFIREFENTKQRLAGTRQILRALVEIAEKKAA
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgcggctgcgacaaagctcaagaaagcggccgcgggacttcaagcggcgcgttcc
ggcctcgtcaaaggcgaaaggctgattttcgcccatgcgccggacggcttcgacgctttc
gtcagcgccgatcttgcgcgcgcgctcgcacgcgagtcggaaggacatgcggcggtcttc
gtgcatgtcgcgcgcgacggcgcgcggtcggcggcctttcgcaccgccctgcgtttcgcc
aatcccgacgtcgaaatcctcgacattccgggatgggactgccagccctacgatcgcgtg
tcgccgcacgcgggcgtcgtggcgcggcgcatgacggcgctttcgcgtctgacacgggca
aaatcctcatccgaacgtccgcgcgtcgtcacgaccaccgtcgattgcctgctgcagcgc
gttccgccgcagaggatggtcgccgcggaaagcttcgccgccgcgcccggcaatgtcgtg
aagctcgacgaactggcgctttggctggagtcgaacggctatctgcgcgccagcaccgtg
cgcgagaccggcgaatacgcgcagcgcggcggcattgtcgatctttatccgccggggctg
ccggccccgatccgtctcgatttctttggcgaaacgctcgaatcgatccgctcgttcgat
cccgatacgcaacgcgcaacggggcagctccgttcgctcgacctgacgcccatgagcgaa
ctgcggctgacgagcgagacgatgcgccgcttccggcagtcctacgctgcgcgctttggc
gggcagacgcgcggcgacgccctttatgaggctgtcagcgaaggccggcgcttccacggg
atggagcattggctgccgctcttctatgagcggatggatacgctcttcgactatctgggc
gaggcgcctgtcgtgctcgatccgcttgtcgaggatgcggcggcggagcgcgtcaagcag
atcgaggattattacgacgcgcgcaaacatgcgcatgatctcgatcccgccgcctcaaac
tataagccgctcgaaccacgcgcgctctatctgtcgctcgaggaatggcgcgcggccatc
gagggacgcgcggcggcgcaattcacgcctttcgcggcgcatgacggcgagaaagtcatt
gactgcggcgcgcggcccggccgcgactttgcgcccgagcgcaacacgcccgacgtcaat
gtcttccaggcggccgccgaccatgtcgaggcgctgcgcgacgcaggcagaacggtcgtc
gtcaccggttggtccgagggctcctgcgagcggctcggccatgtgcttgcggaacacggc
ttgcccgacttgccgcgcgtcgcgtcgcttccgcaggcgttgtcgaaggcggtctccata
gccgttctcgggatcgaacatggcttcgagacggatgcctacgcggttctgggcgagcag
gacattcttggcgatcgcttcgttcgtcgccggcgcaaacgcaagcccaacgaaaatctc
ctgggcgaagtcgccgcgctcgcggccggcgatctcgtcgtgcatgtcgatcacggcatc
ggccgttttatcggccttgagacgatctccgccgccggcgcgccgcatgattgcctcgag
ctccactacgctggcggcgataagctctatctgccggtcgaaaacatcgaactcttgacg
cgctatggcggcgaggacgccgaagcgcagctcgatcggcttggcggcgccggctggcag
tcgcgcaagtcgcggatgaagaatcgcatccgcgaaatggcgaaggggctcatcgagatc
gcggcgcagcggcaattgcgcgaggcgccgaagctcgccccgcccgaaggactctacgac
gaattctgcgcgcgctttccttatgatgaaaccgaggatcagctcgccgccatcgatgcg
acgctcgatgatctcgccgccggccggccgatggatcgactcgtttgcggcgacgttggt
tttggcaagaccgaggtcgcgctgcgcgccgccttctgcgccgccatcaatggcaagcag
gtcgccgtcgtcgcgcccaccaccttgcttgcgcgccagcactacaagaccttcaccgag
cgcttcgccggcctgccggtgcgcatcggacgattgtcgcgcatggtcggagccgcggaa
acgcgcgagacgaagaaggatctcgccgaaggccgcatcgagattttaatcggcacgcat
gccgtgctcggcaagacggtgagctttaaggatcttggactcgtcatcatcgacgaggag
cagcatttcggcgtcggccataaggaacggctgaaagaattgcgcgccgaggtgcatgtt
ctgacgctctcggcgacgccgataccgcgcacgctgcagctcgcgatgacgggcgtgcgt
gagctttcgatcatcgcgacgccgccggtcgaccggctggcggtgcgcagcttcgtctcg
cccttcgattcgctcattgtgcgcgaagcgctgctgcgcgagcgctatcgcggcggccag
gctttcttcgtctgtccgcgcatcgaggacctcgaggaggccgcagcgtttctgcgcgaa
aacgtgcctgagtcaaaattcgtcctggcgcatgggcagatgagcgcgagcgaactcgag
gacaagatgtcggccttctgcgaaggcaaattcgacattctgctgtcaacgacgatcgtc
gagtcgggcctggacatcccacgcgccaatacgctgatcgtctggcgcgccgatatgttc
ggcctcgcgcagctctatcagctgcgtggccgcgtcggccgcgccaaattgcgcgcctac
gcgctgttcacgacgcccgcaacccgcacgatcacgcctcaagcgcaaaagcgtctggac
gtgctgcagtcgctcgatacgcttggcgcgggcttccagctcgccagtcacgatctcgac
attcgcggcgccggcaatctgcttggcgacgagcagtcgggacatatcagggaggtgggc
tacgagctttaccagcagatgctcgccgacgcgatcacgctgttgaaagctggaatcgag
gagccgcaggaggaagcctggtcgccgacgatcgcgatcggcgcgccggtgacgataccg
gaagattatgtcgccgacctcacgctgcgcctgcagctctatcgccgtttgtcgacgctc
gaaacggatcaagacatcgaagcgttcgccgccgagatgatcgaccgtttcggcccgatc
ccgccggaggtggaacagttgctcgagatcgtcgcgatcaaggcgctctgccggcgcgcc
catgtcgaaaagatcgacgccggccccaagggcgtcatcgtcgcgttccgcgaagacaaa
ttcgcaaacccggcggggctcgtgcgttatgtcgcggagcagcggtcaagcgccaaggtg
cgtcccgacatgcgcgttgtgttcatccgcgagttcgagaacacgaaacagcgcctcgcc
ggcacgcgccaaattctgcgcgcgctcgtcgagatcgcggagaagaaggccgcgtga
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