Methylocystis sp. SB2: LNB28_15335
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Entry
LNB28_15335 CDS
T10237
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
mesz Methylocystis sp. SB2
Pathway
mesz03030
DNA replication
mesz03410
Base excision repair
mesz03420
Nucleotide excision repair
mesz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mesz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LNB28_15335 (polA)
03410 Base excision repair
LNB28_15335 (polA)
03420 Nucleotide excision repair
LNB28_15335 (polA)
03440 Homologous recombination
LNB28_15335 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mesz03032
]
LNB28_15335 (polA)
03400 DNA repair and recombination proteins [BR:
mesz03400
]
LNB28_15335 (polA)
Enzymes [BR:
mesz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LNB28_15335 (polA)
DNA replication proteins [BR:
mesz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LNB28_15335 (polA)
DNA repair and recombination proteins [BR:
mesz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LNB28_15335 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LNB28_15335 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
Taq-exonuc
Motif
Other DBs
NCBI-ProteinID:
ULO23488
LinkDB
All DBs
Position
complement(3151768..3154758)
Genome browser
AA seq
996 aa
AA seq
DB search
MTLTHKPVGPGSHIFLVDGSSFVFRAYFQSIRQDAKYNYRSDRLPTGAVRLFCTKLLQFV
REGAAGVKPTHLAIIFDKSEHSFRKDLYPDYKAHRTEPPDDLIPQFPLMRAVVRAFGLTP
IEQDVYEADDLIATYATQAQAKGADVLIVSADKDLMQLVGPGVRMCDPASGTAGTKGARE
ERLIGEAEVVDYFGVTPDKVVDVQALAGDSTDNVPGAKGIGVKTAAQLINEYGDLETLLA
QAPGIKQPKRREALTEPDAVARILLSQKLCELVRDVPLDTPLEDLGLHQPDATKLIAFLQ
AMEFTTITRRVAELYGVHAQDIEPDPRFLGAAGWRGRDGELSEIAAPAAEAPRAEKPTSD
ALTPANLVAARLAEAKAVKIDRSTYETVISAERLDDWITEAAGAGLVAINVETTLPDPMR
CELIGVSLATAPGRACYIPLQHRSGDAADLFSGANLVEGQIPLDAALARLKPLFEDASIL
KIAHNMKHDLLVLSRYGIDVAPIDDAMLMSYALDSGRGDHRLEELARNYCGHDVLTFASV
AGAGRNFLGFARAALTAATEYAAEQADISLRLWRVLKPRLLAERMTTVYETLERPMVATL
ARMERRGVMVERATLSRLSGEFAQDMARLEAEIFELAGESFNLGSPKQLGDILFGKMGLP
GAKKTATGAWSTSASVLEDLAVAGNDFSRRILDWRQLSKLKSTYADALPGYINAETGRVH
TSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFVSAPGHVLISADYSQIELRLLAH
IADIPQLRRAFAENLDIHAMTASEMFNVPIKDMPPETRRRAKAINFGIIYGISAFGLANQ
LSIPREEASAYIKRYFERFPGIRDYMDSTRKTVREKGEVSTIFGRIYHFPGISSANASDR
AFYERAAINAPIQGAAADIIRRAMIRMDDALARAGLSAQMLLQVHDELVFEAPNDEAEAT
IELARRVMEQAPTPAVHLAVPLKVDARAAVNWDEAH
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgaccctcacacataagcccgtcggccctgggagccacatcttcctcgttgacggctcc
tccttcgtctttcgcgcctattttcagtcgatccgacaggatgcgaaatacaactatcgc
tccgaccggctgccgaccggcgccgtgcggctgttctgcacgaagctgttgcagttcgtg
cgcgaaggcgcggccggcgtgaagcccacgcatctcgccatcatcttcgacaagagcgag
cattcgttccgaaaggacctttatcccgactataaggcgcaccgcaccgagccgccggac
gatctcattccgcagttcccgctgatgcgcgccgtcgtgcgcgctttcggcctcaccccc
atcgaacaggacgtctacgaggccgacgatctcatcgccacctatgcgacgcaggcgcag
gccaagggcgccgacgtgctgatcgtctcggccgacaaggatctgatgcagctcgtcggt
cccggcgtcagaatgtgcgaccccgcctcggggacggcgggaacgaaaggcgcgcgcgaa
gaacgcctcatcggcgaagccgaggtcgtcgactatttcggcgttacgccggacaaggtc
gtcgacgtgcaggcgctcgcaggcgattccactgacaatgtgccgggcgccaaaggcatc
ggcgtcaagaccgccgctcagctcatcaacgaatatggcgatctcgaaacgctgctcgcc
caggcgcccggcatcaagcagcccaagcgccgcgaggcgctgaccgagccggacgcggtc
gcgcgcatccttctttcgcagaagctctgcgagctcgtgcgcgacgtccctctggacacg
ccgctcgaagaccttggccttcatcaacctgatgcgacgaagctcatcgcttttctgcag
gcgatggagttcacgacgatcacccgccgcgtcgccgagttgtatggggtccatgcgcag
gatatcgaacccgatccccgattcttgggcgcggccggctggcgcgggcgcgacggcgaa
ttgtccgagatcgcagcgcccgctgctgaagcgccgcgcgcggagaagccgacaagcgac
gcgctcacgcccgcgaacctcgtcgccgcgcgtctcgccgaagcgaaggcggtcaagatc
gaccgctccacttatgaaacggtcatctcggccgagcgtctggatgattggatcacggaa
gccgctggcgcaggactggtcgcaatcaatgtcgaaacgaccttgccggatccgatgcgc
tgcgaactcatcggcgtctcgctggcgaccgcgccgggacgcgcctgctatatcccgcta
cagcatcgctccggcgacgcggctgaccttttttccggcgccaatttggtcgagggacag
atcccgctcgacgcggcgctcgcgcgattgaagccgctgtttgaggacgcctcgattctc
aaaatcgcacacaatatgaagcatgatctgctggttctttcgcgctacggaatcgacgtc
gcgccgatcgacgacgccatgctcatgtcctacgcgctggactcgggacgtggcgatcat
cgtctcgaagagctggcgcgcaattattgcggccatgacgttctgaccttcgcctccgtc
gccggcgcgggccgcaattttctcggctttgcccgcgctgcgctcacagcggcgacggaa
tacgccgcggaacaggccgacatttccctgcgcctttggcgcgtgctgaagccgcggctc
ttggccgagcgcatgaccacggtctacgagaccttggagcggccgatggtcgcgacgctc
gcgcgcatggagcgaaggggcgtcatggtcgagcgcgcgaccttgtcgcggctctccggc
gaatttgcgcaggacatggcgcgactcgaggccgagatcttcgaacttgccggcgagagt
ttcaaccttggctcgcccaagcaattgggcgacatacttttcggcaagatggggttgccc
ggcgcgaagaaaacggcgaccggcgcctggtcgacttccgcaagcgttctcgaagacctc
gccgtcgccggcaatgatttttcgcgccgcattctcgattggcgtcagctctccaagctc
aagagcacctacgccgacgccctgcccggctatatcaacgccgagaccggtcgcgtgcac
acgagctatgcgctcgccgccacgacgacgggacggctctcttcatccgagcccaatctg
cagaacattcccgtgcgcaatgaagccggccgcaaaatccgcaaggcctttgtctcggcg
cccggccatgtgctgatctcggcggattattcgcagatcgagttgcggctgctcgcccat
atcgccgacattcctcagctcagacgcgccttcgccgaaaatctcgacattcacgcgatg
acggcgagcgagatgttcaatgtgcccatcaaggacatgccgcccgaaacgcgccgccgc
gccaaggcgatcaacttcggcatcatctacggcatttccgctttcggcctcgccaatcag
ctgagcattccgcgcgaagaggcgagcgcctacatcaagcgctatttcgaacgctttccc
ggcattcgcgactacatggattcaacgcgtaagacggtgcgcgagaaaggcgaagtctcg
acgattttcggccgaatctaccacttccccggcatctcatcggccaatgcatccgaccgc
gccttctatgagcgcgcggcgatcaacgcgccgatccagggcgcggccgcggacatcatc
agacgcgccatgatacggatggatgacgcgctcgcacgcgccggtctctcggcgcagatg
cttctgcaggtgcatgacgagcttgtgttcgaagcgccgaacgatgaagccgaggcgacg
atcgaactcgcgcgccgcgtcatggagcaggcgcccacgcccgccgtccatctcgccgtg
ccgctgaaagtcgatgcgcgcgccgccgtcaattgggacgaagcccactga
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