KEGG   Methylocystis sp. SB2: LNB28_15335
Entry
LNB28_15335       CDS       T10237                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
mesz  Methylocystis sp. SB2
Pathway
mesz03030  DNA replication
mesz03410  Base excision repair
mesz03420  Nucleotide excision repair
mesz03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:mesz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LNB28_15335 (polA)
   03410 Base excision repair
    LNB28_15335 (polA)
   03420 Nucleotide excision repair
    LNB28_15335 (polA)
   03440 Homologous recombination
    LNB28_15335 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mesz03032]
    LNB28_15335 (polA)
   03400 DNA repair and recombination proteins [BR:mesz03400]
    LNB28_15335 (polA)
Enzymes [BR:mesz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     LNB28_15335 (polA)
DNA replication proteins [BR:mesz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LNB28_15335 (polA)
DNA repair and recombination proteins [BR:mesz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     LNB28_15335 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LNB28_15335 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 DNA_polI_exo1 Taq-exonuc
Other DBs
NCBI-ProteinID: ULO23488
LinkDB
Position
complement(3151768..3154758)
AA seq 996 aa
MTLTHKPVGPGSHIFLVDGSSFVFRAYFQSIRQDAKYNYRSDRLPTGAVRLFCTKLLQFV
REGAAGVKPTHLAIIFDKSEHSFRKDLYPDYKAHRTEPPDDLIPQFPLMRAVVRAFGLTP
IEQDVYEADDLIATYATQAQAKGADVLIVSADKDLMQLVGPGVRMCDPASGTAGTKGARE
ERLIGEAEVVDYFGVTPDKVVDVQALAGDSTDNVPGAKGIGVKTAAQLINEYGDLETLLA
QAPGIKQPKRREALTEPDAVARILLSQKLCELVRDVPLDTPLEDLGLHQPDATKLIAFLQ
AMEFTTITRRVAELYGVHAQDIEPDPRFLGAAGWRGRDGELSEIAAPAAEAPRAEKPTSD
ALTPANLVAARLAEAKAVKIDRSTYETVISAERLDDWITEAAGAGLVAINVETTLPDPMR
CELIGVSLATAPGRACYIPLQHRSGDAADLFSGANLVEGQIPLDAALARLKPLFEDASIL
KIAHNMKHDLLVLSRYGIDVAPIDDAMLMSYALDSGRGDHRLEELARNYCGHDVLTFASV
AGAGRNFLGFARAALTAATEYAAEQADISLRLWRVLKPRLLAERMTTVYETLERPMVATL
ARMERRGVMVERATLSRLSGEFAQDMARLEAEIFELAGESFNLGSPKQLGDILFGKMGLP
GAKKTATGAWSTSASVLEDLAVAGNDFSRRILDWRQLSKLKSTYADALPGYINAETGRVH
TSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFVSAPGHVLISADYSQIELRLLAH
IADIPQLRRAFAENLDIHAMTASEMFNVPIKDMPPETRRRAKAINFGIIYGISAFGLANQ
LSIPREEASAYIKRYFERFPGIRDYMDSTRKTVREKGEVSTIFGRIYHFPGISSANASDR
AFYERAAINAPIQGAAADIIRRAMIRMDDALARAGLSAQMLLQVHDELVFEAPNDEAEAT
IELARRVMEQAPTPAVHLAVPLKVDARAAVNWDEAH
NT seq 2991 nt   +upstreamnt  +downstreamnt
atgaccctcacacataagcccgtcggccctgggagccacatcttcctcgttgacggctcc
tccttcgtctttcgcgcctattttcagtcgatccgacaggatgcgaaatacaactatcgc
tccgaccggctgccgaccggcgccgtgcggctgttctgcacgaagctgttgcagttcgtg
cgcgaaggcgcggccggcgtgaagcccacgcatctcgccatcatcttcgacaagagcgag
cattcgttccgaaaggacctttatcccgactataaggcgcaccgcaccgagccgccggac
gatctcattccgcagttcccgctgatgcgcgccgtcgtgcgcgctttcggcctcaccccc
atcgaacaggacgtctacgaggccgacgatctcatcgccacctatgcgacgcaggcgcag
gccaagggcgccgacgtgctgatcgtctcggccgacaaggatctgatgcagctcgtcggt
cccggcgtcagaatgtgcgaccccgcctcggggacggcgggaacgaaaggcgcgcgcgaa
gaacgcctcatcggcgaagccgaggtcgtcgactatttcggcgttacgccggacaaggtc
gtcgacgtgcaggcgctcgcaggcgattccactgacaatgtgccgggcgccaaaggcatc
ggcgtcaagaccgccgctcagctcatcaacgaatatggcgatctcgaaacgctgctcgcc
caggcgcccggcatcaagcagcccaagcgccgcgaggcgctgaccgagccggacgcggtc
gcgcgcatccttctttcgcagaagctctgcgagctcgtgcgcgacgtccctctggacacg
ccgctcgaagaccttggccttcatcaacctgatgcgacgaagctcatcgcttttctgcag
gcgatggagttcacgacgatcacccgccgcgtcgccgagttgtatggggtccatgcgcag
gatatcgaacccgatccccgattcttgggcgcggccggctggcgcgggcgcgacggcgaa
ttgtccgagatcgcagcgcccgctgctgaagcgccgcgcgcggagaagccgacaagcgac
gcgctcacgcccgcgaacctcgtcgccgcgcgtctcgccgaagcgaaggcggtcaagatc
gaccgctccacttatgaaacggtcatctcggccgagcgtctggatgattggatcacggaa
gccgctggcgcaggactggtcgcaatcaatgtcgaaacgaccttgccggatccgatgcgc
tgcgaactcatcggcgtctcgctggcgaccgcgccgggacgcgcctgctatatcccgcta
cagcatcgctccggcgacgcggctgaccttttttccggcgccaatttggtcgagggacag
atcccgctcgacgcggcgctcgcgcgattgaagccgctgtttgaggacgcctcgattctc
aaaatcgcacacaatatgaagcatgatctgctggttctttcgcgctacggaatcgacgtc
gcgccgatcgacgacgccatgctcatgtcctacgcgctggactcgggacgtggcgatcat
cgtctcgaagagctggcgcgcaattattgcggccatgacgttctgaccttcgcctccgtc
gccggcgcgggccgcaattttctcggctttgcccgcgctgcgctcacagcggcgacggaa
tacgccgcggaacaggccgacatttccctgcgcctttggcgcgtgctgaagccgcggctc
ttggccgagcgcatgaccacggtctacgagaccttggagcggccgatggtcgcgacgctc
gcgcgcatggagcgaaggggcgtcatggtcgagcgcgcgaccttgtcgcggctctccggc
gaatttgcgcaggacatggcgcgactcgaggccgagatcttcgaacttgccggcgagagt
ttcaaccttggctcgcccaagcaattgggcgacatacttttcggcaagatggggttgccc
ggcgcgaagaaaacggcgaccggcgcctggtcgacttccgcaagcgttctcgaagacctc
gccgtcgccggcaatgatttttcgcgccgcattctcgattggcgtcagctctccaagctc
aagagcacctacgccgacgccctgcccggctatatcaacgccgagaccggtcgcgtgcac
acgagctatgcgctcgccgccacgacgacgggacggctctcttcatccgagcccaatctg
cagaacattcccgtgcgcaatgaagccggccgcaaaatccgcaaggcctttgtctcggcg
cccggccatgtgctgatctcggcggattattcgcagatcgagttgcggctgctcgcccat
atcgccgacattcctcagctcagacgcgccttcgccgaaaatctcgacattcacgcgatg
acggcgagcgagatgttcaatgtgcccatcaaggacatgccgcccgaaacgcgccgccgc
gccaaggcgatcaacttcggcatcatctacggcatttccgctttcggcctcgccaatcag
ctgagcattccgcgcgaagaggcgagcgcctacatcaagcgctatttcgaacgctttccc
ggcattcgcgactacatggattcaacgcgtaagacggtgcgcgagaaaggcgaagtctcg
acgattttcggccgaatctaccacttccccggcatctcatcggccaatgcatccgaccgc
gccttctatgagcgcgcggcgatcaacgcgccgatccagggcgcggccgcggacatcatc
agacgcgccatgatacggatggatgacgcgctcgcacgcgccggtctctcggcgcagatg
cttctgcaggtgcatgacgagcttgtgttcgaagcgccgaacgatgaagccgaggcgacg
atcgaactcgcgcgccgcgtcatggagcaggcgcccacgcccgccgtccatctcgccgtg
ccgctgaaagtcgatgcgcgcgccgccgtcaattgggacgaagcccactga

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