Methylobacterium sp. 4-46: M446_0359
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Entry
M446_0359 CDS
T00679
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
met
Methylobacterium sp. 4-46
Pathway
met03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
met00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M446_0359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
met03021
]
M446_0359
03400 DNA repair and recombination proteins [BR:
met03400
]
M446_0359
Enzymes [BR:
met01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M446_0359
Transcription machinery [BR:
met03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M446_0359
DNA repair and recombination proteins [BR:
met03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M446_0359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
DUF6241
Motif
Other DBs
NCBI-ProteinID:
ACA14930
UniProt:
B0UHX5
LinkDB
All DBs
Position
complement(428001..432203)
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEVMNLFNQQAQPQSFDQIKISISSPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHIELAAPVAHIWFLKS
LPSRIGLLLDMALKDLERILYFESYVVIEPGLTPLKERQLLSEEEYLRAQEEYGEDSFTA
MIGAEAIRRILQDLNLEKIAADLRQEIATTTSDLKPKKLLKRLKIIEAFQLSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDIVLGLYYLSIVADGAPGEYKSNNPLNPMQGVYG
DFGELEHALASRAVTLHSKVKWRWKGLGPDGEEVTRTYDTTPGRVILSSVLPRHPKVPFD
VVNKLMTKKEISAMIDTVYRHCGQKESVIFCDRIMGLGFSHAFKAGISFGKDDMVVPENK
WTIVDETRALVKDYEQQYQDGLITQGEKYNKVVDAWAKCSDRLASEMMNRISSVQKDEKG
ADKQVNSIYMMSHSGARGSPAQMKQLAAMRGLMAKPSGEIIESPIISNFKEGLDVLEYFN
STHGARKGLADTALKTANSGYLTRRLVDVAQDAVIREVDCGTDAGIRMRAIIDAGQVVAT
LATRILGRATAEDLVAQDGSIIVPKGQMIEERHLDAINKAGIQEVKIRSVLVCATKNGVC
ATCYGRDLARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADSSFIESSFEG
TVRIRNRGLARNSDGDLIAIGRNVAVVIVGPDGTERAVHRLQYGARVRVDEGDSIKRGQR
IAEWDPYTRPILTEVDGIVAYEDLIDGQSITETTDESTGIAKRVVIDWRGSARTADLRPA
LAIHDQNGKVLKLPRGSDARALLPVEAIIGVDPGARVKAGDILARVSTESAKTRDITGGL
PRVAELFEARRPKDAAIIAEKSGTISFGRDYKNKRRLSLTPHDGSEPVEYLIPKGKHIHL
QDGDVVEVGDFIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVSINDKHIEVIVR
QMLQKVEITDSGDSEILTGDQIDRTELQEINEQLVSEGKKPVQGVPVLLGITKASLQTRS
FISAASFQETTRVLTEAAVNGKVDTLEGLKENVIVGSLIPAGTGAMIADIKSIARRRDEL
IMAQKTAESGAALQELPAAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaaccagcaggctcagcctcagagcttcgaccag
atcaagatctcgatctcgtcgcctgagaagatcctgtcttggtcctacggtgagatcaag
aagcccgagaccatcaactatcggaccttcaagccggagcgggacggcctgttctgcgcg
cggatcttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcgtcatctgcgagaagtgcggcgtcgaggtcaccctcgcgcgcgtgcggcgc
gaccgcatgggccacatcgagctcgcggcgcccgtggcccatatctggttcctgaagtcc
ctgccgagccgcatcggcctgctgctcgacatggcgctcaaggacctggagcgcatcctc
tacttcgagtcctacgtcgtcatcgagccgggcctcacccccctcaaggagcgtcagctc
ctctcggaggaggagtacctgcgcgcgcaggaggagtacggcgaggattccttcacggcg
atgatcggcgccgaggcgatccggcgcatcctccaggacctcaacctggagaagatcgcg
gccgacctgcgccaggagatcgccacgaccacttccgacctgaagcccaagaagctgctc
aagcgcctcaagatcatcgaggcgttccagctctcgggcaacaagccggaatggatgatc
ctgacggtcgtgccggtgatcccgccggacctgcggccgctggtgcccctggacggcggc
cgcttcgcgacctccgacctcaacgacctctaccggcgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgagctgcgcgcgcccgacatcatcatccgcaacgagaagcggatg
ctgcaggaggcggtcgacgcgctgttcgacaacggccgccgcggccgcgtcatcacgggc
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgactattcgggccgctcggtcatcgtggtcggc
cccgaactgaagctgcaccagtgcggcctgcccaagaagatggcgcttgagctgttcaag
ccgttcatctacgcgcgcctcgacgccaagggcttctcggccacggtgaagcaggccaag
aagctggtcgagaaggagaagccggaggtctgggacatcctcgacgaggtgatccgcgag
cacccggtgatgctgaaccgggcgccgacgctgcaccggctgggcatccaggccttcgag
ccgaagctgatcgagggcaaggcgatccagctgcacccgctcgtctgcgccgccttcaac
gcggatttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaggcgcagctg
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcacccggcgaacggcgccccg
atcatcgtgccctcgcaggacatcgtgctcgggctctactacctgtcgatcgtcgccgac
ggcgcgccgggcgagtacaagtcgaacaacccgctgaacccgatgcagggcgtctacggc
gatttcggcgaactggagcacgccctggcctcgcgggcggtgacgctgcactccaaggtc
aagtggcgctggaagggcctcggcccggacggcgaggaggtcacgcgcacctacgacacc
acgcccggccgcgtcatcctctccagcgtgctgccgcgccaccccaaggttcccttcgac
gtcgtcaacaagctgatgaccaagaaggagatctcggcgatgatcgacaccgtctaccgc
cattgcggtcagaaggagtcggtgatcttctgcgaccgcatcatgggcctgggcttcagc
cacgccttcaaggccggcatctccttcggcaaggacgacatggtcgtgccggagaacaag
tggacgatcgtcgacgagacccgcgccttggtgaaggactacgagcagcagtaccaggac
ggtctgatcacccagggtgagaagtacaacaaggtcgtggacgcctgggcgaagtgctcg
gaccggctcgccagcgagatgatgaaccgcatctcctcggtgcagaaggacgagaagggc
gccgacaagcaggtcaactcgatctacatgatgagccactccggcgcgcgcggctcgccg
gcccagatgaagcagctcgcggcgatgcgcggcctgatggcgaagccgtcgggcgagatc
atcgagagcccgatcatctcgaacttcaaggaaggcctggacgtgctcgagtacttcaac
tcgacgcacggcgcccgcaagggcctcgccgacaccgccctgaagaccgcgaattcgggc
tacctgacccgccgcctcgtcgacgtggcgcaggacgcggtcatccgcgaggtggattgc
ggcaccgatgcggggatccgcatgcgggcgatcatcgatgccgggcaggtcgtggcgacg
ctcgcgacccgcatcctcggccgcgccacggcggaggacctcgtcgcgcaggacggctcg
atcatcgtgcccaagggccagatgatcgaggagcgccacctggacgccatcaacaaggcc
ggcatccaggaggtgaagatccgctccgtgctggtctgcgccaccaagaacggcgtctgc
gccacctgctacgggcgcgacctcgcccgcggcacccccgtcaaccagggcgaggcggtc
ggcgtcatcgcggcgcagtcgatcggcgagccgggcacccagctgacgatgcggaccttc
cacatcggcggcgcggcccagatcgcggattcgtccttcatcgagtcgagcttcgagggc
acggtgaggatccgcaaccgcggcctcgcccgcaactcggacggcgacctgatcgccatc
ggccgcaacgtggccgtggtgatcgtcgggccggacggcaccgagcgggcggtccaccgc
ctgcaatacggcgcccgcgtccgggtcgacgagggcgactcgatcaagcgcggccagcgc
atcgccgagtgggatccctacacccggccgatcctgaccgaggtcgacggcatcgtcgcc
tacgaggacctgatcgacggccagtcgatcaccgagaccaccgacgagtcgaccggcatc
gccaagcgcgtcgtcatcgactggcggggctcggcgcgcaccgccgacctgcgcccggcg
ctcgcgatccacgaccagaacggcaaggtgctgaagctgccccgcggctccgacgcccgc
gccctgctgcccgtggaggcgatcatcggtgtggatccgggcgcccgggtcaaggccggc
gacatcctggcccgcgtctcgaccgagagcgccaagacccgcgacatcaccggcggtctg
ccgcgggtggcggagctgttcgaggcgcggcgcccgaaggacgcggcgatcatcgcggag
aagtcgggcacgatctcgttcgggcgcgactacaagaacaagcgccgcctgtcgctcacc
ccgcatgacgggtccgagccggtcgagtacctgatcccgaagggaaagcacatccacctt
caggacggggacgtggtcgaggtcggcgacttcatcgtcgacggcaacccggcgccgcac
gacatcctggcgatcaagggcgtagaggagctcgcggcctacctcgtcaacgagatccag
gaggtctaccggctgcagggcgtgtcgatcaacgacaagcacatcgaggtgatcgtccgc
cagatgctgcagaaggtggagatcaccgacagcggcgattccgagatcctgaccggcgac
cagatcgaccggacggagctgcaggagatcaacgagcagttggtctccgagggcaagaag
ccggtgcagggcgtgcccgtcctgctcggcatcaccaaggcctcgctgcagacccgctcg
ttcatctcggcggcgtccttccaggagaccacccgcgtcctcaccgaggcggcggtcaac
ggcaaggtcgacaccctcgaggggctgaaggagaacgtgatcgtcggctcgctgatcccg
gcgggcacgggcgcgatgatcgccgacatcaagtcgatcgcgcggcgccgcgacgagctg
atcatggcccagaagaccgccgagagcggcgcggccctgcaggaactgcccgccgccgag
tag
DBGET
integrated database retrieval system
