Methylobacterium sp. 4-46: M446_0501
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Entry
M446_0501 CDS
T00679
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
met
Methylobacterium sp. 4-46
Pathway
met03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
met00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M446_0501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
met03400
]
M446_0501
Enzymes [BR:
met01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M446_0501
DNA repair and recombination proteins [BR:
met03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M446_0501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
UB2H
AAA_30
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACA15064
LinkDB
All DBs
Position
complement(593518..596814)
Genome browser
AA seq
1098 aa
AA seq
DB search
MVKRQPRAARRAEIVAPALPDGALAEALLSLSAAASPLVLVARDARRLDGIAAILRALAP
GLGVAVYPAWDCLPGDRTSPSRGAMGARAGVLRWLSEPAPPAIVLTTAPALIQRVPPPET
WAQARVLLRVGEQVEAEALEAALTRLGYIPDERVDEPGEIALRGRTFEVFPAAAPVPCRV
EHEDGHITAIRSYDPVTQRSLGEAAELLIDPATELILGPDSPEPLRPFTGQEHRLPAFYP
RLATLLDPVPGARLVVEAGAEARAEAFFEQLAEAGGARAGAGLYLAPEEWRALLGRRRIA
TALPSEDRAVPAFARERRPAAAFGRFLAARCEAGDRVILAGPGRALGRLAREAVDQLGHK
LLRARDWAAALRAEPGRVAVLEAPIAEGFRVPDHALTVIAAADLLGKRAAPAWAAPARAA
PGREGAPAALPFADPDLHRGDVVIHEDHGLCVFEGLELLRGPEGGGGEAARLRFADDAVR
LAPLSEAGRIWRYGAAAEAVTLDRLDGGNLPGGTWATRRAGVEAAVAESARRMLALAEAR
RRATAPALVPPERQMERFGAGFGFPPTPDQAAAIDAVMADLAAGRPMDRLVCGDVGFGKT
EVALRAAAAALFAGKQVAVAAPTTVLVRQHVETFRRRFARFGIVPAQLSRLVPPAEAKRV
RAGLADGSVRLVIGTHALAGRGLVYADLGLVVIDEEQRFGAAQKARLRRAASGAHVLTLT
ATPIPRTLQSALVGLQDLSVIATPPVVRRPIRTVVAPFDPETVRAALTREHRRGGQSFVV
CPRIADLAPMEARLRAIVPDLSLAVAHGEMPPAAMDEAMVRFAEGEGDVLLATNIIESGL
DVPRANTMLVWHPERFGLAQLHQLRGRVGRGQRRAAAYLLTDPEAPPPPASEARLRALTA
LDRLGAGFALSARDLDLRGAGDLFGEEQAGHVKLIGLGLYRDLLERAIRAARGEPPEAAP
AEIRLGLAGAIPAAYLPEPELRFGLAARIARLRSPEEAEALRDEIEDRFGPLPPETETLL
TLAGLRMACRDLGIAQLGAGPQGLAADFHPGRAAAVARAIAEVERRGDRLILHRPCADPV
ACGRLARRFVRALEAAQG
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagcgtcagccgcgcgccgcgcgccgcgcggagatcgtggcgccggccctcccc
gacggcgccctcgcggaggcgctcctgagcctgagcgcggcggcatcgcccctcgtgctg
gtggcccgggacgcgcggcgcctcgacgggatcgccgcgatcctgcgggcgctcgccccc
gggctcggcgtggccgtctatcccgcctgggattgcctgccgggcgaccgcacctcgccc
tcgcggggcgccatgggcgcgcgggcgggggtgctgcgctggctctccgagccggctcct
cccgccatcgtcctgacgaccgcgcccgccctgatccagcgcgtgccgccgcccgagacc
tgggcgcaggcccgcgtcctcctgcgggtgggcgagcaggtggaggccgaggcgctggag
gcggccctgacgcgcctcggctacatccccgacgagcgggtcgacgagccgggcgagatc
gccctgcgcggccgcaccttcgaggtcttcccggccgccgcccccgtcccgtgccgcgtc
gagcacgaggacgggcacatcacggcgatccgctcctacgatccggtcacccagcgctcg
ctcggcgaggcggccgagctgctgatcgacccggcgaccgagctcatcctcggtcccgat
tcccccgagccgctgcggcccttcaccgggcaggagcaccgccttcccgccttctacccg
cgcctcgcgacgctcctcgacccggtgccgggcgcccgcctcgtggtcgaggccggggcg
gaggcgcgggccgaggccttcttcgagcagctggcggaggcgggcggcgcgcgggcgggc
gcggggctctacctcgcgccggaggagtggcgggcgctcctcgggcggcgccggatcgcc
acggccctgccgtccgaggaccgggcggtgccggccttcgcccgcgagcgccgccccgcc
gccgccttcgggcgcttcctcgccgcgcggtgcgaggcgggcgaccgcgtcatcctggcc
gggcccggccgcgcgctggggcgcctcgcccgcgaggccgtggaccagctcgggcacaag
ctcctgcgggcgcgcgactgggccgccgcgctccgggccgagcccggccgcgtggcggtg
ctggaggcgccgatcgccgaggggttccgggtgccggaccacgccctcacggtgatcgcc
gcggccgacctgctcggcaagcgggccgcgcccgcctgggccgcgcccgcccgggccgcg
cccggccgggagggcgcccccgccgcgctgcccttcgccgatcccgacctgcatcgcggc
gacgtcgtcatccacgaggatcacgggctctgcgtcttcgaggggctggagctcctgcgc
gggcccgagggcgggggcggggaggcggcgcggctgcgcttcgccgacgacgcggtgcgg
ctcgcccccctctcggaggccggccggatctggcgctacggcgccgccgccgaggcggtg
acgctcgaccgcctcgacggcggcaacctccccggcggtacctgggcgacgcgccgcgcc
ggcgtggaggcggccgtcgccgagagcgcgcggcgcatgctcgccctcgccgaggcgcgc
cggcgcgcgacggctcccgccctcgtcccgccggagcgccagatggagcggttcggcgcc
gggttcggcttcccgccgaccccggaccaagcggccgcgatcgacgccgtgatggcggac
ctcgccgccggccgcccgatggaccgccttgtctgcggcgatgtcggcttcggcaagacc
gaggtcgccctgcgcgccgccgccgcggccctgttcgccggcaagcaggtggcggtggcg
gcacccacgaccgtgctggtgcgccagcacgtcgagaccttccggcgccgcttcgcccgc
ttcgggatcgtcccggcccagctctcgcgcctcgtgccgcccgccgaggccaagcgggtg
agggccggcctggcggatgggagcgtgcgcctcgtgatcggcacgcacgcgcttgccggg
cgcggcctcgtctacgccgatctcggcctcgtcgtcatcgacgaggagcagcgcttcggc
gcggcccagaaggcgcggctgcgccgcgccgcgtccggcgcgcacgtcctcaccctcacg
gcgacgccgatcccgcgcaccctgcaatcggccctggtcgggctccaggacctgagcgtg
atcgcgacgccgccggtggtgcgccggccgatccgcacggtggtcgcgcccttcgacccc
gagacggtgcgggccgcgctcacccgcgagcaccgccggggcggccagagcttcgtggtc
tgcccgcgcatcgccgacctcgccccgatggaggcgcggctgcgcgccatcgtgccggac
ctcagcctcgccgtcgcccacggcgagatgccgccggccgcgatggacgaggcgatggtg
cggttcgcggaaggggagggggacgtgctcctggccaccaacatcatcgagagcgggctc
gacgtgccgcgcgccaacacgatgctggtctggcacccggagcgcttcgggctggcgcag
ctccaccagctgcgcgggcgggtggggcgcggccagcgccgggcggcggcctacctgctc
accgacccggaggcgccgcccccgccggcgagcgaggcgcgcctgcgcgccctgacggcc
ctggaccggctcggcgccggcttcgcgctgagcgcccgcgacctcgacctgcgcggggcg
ggggacctgttcggcgaggagcaggccgggcacgtcaagctgatcgggctcggcctctac
cgcgacctcctggagcgggcgatccgcgccgcccgcggcgagccgcccgaggcggcgccg
gccgagatccgcctcggcctcgcgggggcgatcccggccgcctacctgcccgagccggag
ctgcgcttcggcctcgcggcccggatcgcgcggctgcgctcccccgaggaggcggaagcc
ctgcgcgacgagatcgaggaccgcttcggcccgctgccgccggagaccgagacgctgctg
accctggccggcctgcggatggcctgccgcgacctcggcatcgcgcagctcggcgccggc
ccgcagggcctcgcggcggatttccatccgggccgcgccgcggcggtggcgcgggcgatc
gccgaggtggagcgccggggagaccggctgatcctgcaccggccctgcgcggacccggtc
gcctgcgggcggctggcgcggcgcttcgtgcgggcgctggaggcggcgcaggggtga
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