Methylobacterium sp. 4-46: M446_5275
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Entry
M446_5275 CDS
T00679
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
met
Methylobacterium sp. 4-46
Brite
KEGG Orthology (KO) [BR:
met00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
met03016
]
M446_5275
Enzymes [BR:
met01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
M446_5275
Transfer RNA biogenesis [BR:
met03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
M446_5275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ACA19599
LinkDB
All DBs
Position
complement(5792087..5792701)
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AA seq
204 aa
AA seq
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MPHRLHRGDLPDDYAPGPAIAVDTETLGLEPHRDRLCVVQISRGDGEADLVQIAKGGPEP
VVLKRVLTDPAVTKIFHFARFDLAVLFHRLGVMPGPIYCTKVASRLSRTYTDRHGLKDLV
RELLGIEISKQQQSSDWGAETLSPAQIEYAASDVLHLHALRAKLDAMLAREERTALAEAC
FAFLPTRARLDLLGWDEVDILAHS
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgccccaccgcctgcaccgcggcgacctgcccgacgattacgctccgggcccggccatc
gcggtcgacaccgagaccctcggcctcgagccccaccgggaccgcctctgcgtggtccag
atctcccgcggcgacggcgaggccgacctcgtccagatcgccaagggcgggcccgaaccc
gtggtgctcaagcgcgtcctgaccgatcccgcggtcaccaagatcttccacttcgcccgc
ttcgacctcgcggtgctcttccaccggctcggcgtgatgccggggccgatctactgcacc
aaggtcgcctcgcggctctcccgcacctacaccgaccggcacgggctcaaggacctcgtg
cgggagttgctcggaatcgagatctccaagcagcagcaatcgtccgattggggcgccgag
acgctgagccccgcccagatcgagtacgcggcctcggacgtgctgcacctgcacgccctg
cgcgccaagctcgacgcgatgctcgcccgcgaggagcggaccgccctggccgaggcctgc
ttcgccttcctgccgacgcgggcgcggctcgacctgctcggctgggacgaggtggacatc
ctggcgcacagctga
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