Methylobacterium sp. 4-46: M446_6484
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Entry
M446_6484 CDS
T00679
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
met
Methylobacterium sp. 4-46
Pathway
met03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
met00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M446_6484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
met03019
]
M446_6484
Enzymes [BR:
met01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M446_6484
Messenger RNA biogenesis [BR:
met03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M446_6484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
CMS1
HEM4
CheB_methylest
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ACA20742
LinkDB
All DBs
Position
complement(7130719..7132218)
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AA seq
499 aa
AA seq
DB search
MTQFVDFGLAAPILKALAETGYVTPTPIQAQAVPQAMAGRDLCGIAQTGTGKTAAFALPI
LHRLASETPQRRAPRRGCRVLVLSPTRELASQIAESFGDYGKFLPFSTTVVFGGVTIGRQ
ERALANGVDILVATPGRLLDLIDRRSLSLDAVEYLVLDEADQMLDLGFIHALKRIVTLLP
KARQSLFFSATMPRNIATLAAQYLRDPVQVAVTPVATTAERVEQRVVHVPTGAKQALLAT
ILRDASIDRVLVFTRTKHGADRVVRGLEKAGIGSAAIHGNKSQPQRERALAAFRAGICRV
LVATDIAARGIDVEGVSHVVNFDLPNVPEAYVHRIGRTARAGADGLAISFCNDEERAYLR
DIERLTRQKVPEMAIPEGFVPPSRQEAAVAEAEAERDRRQPGPRGQRPGRPQGGRPPQTQ
GGRPAEARPRPARQGQDGRQARTNQDGRPARQGQDARPAHHRAEGPNHRQGQPQRRDHAR
PAQGGQDGRSIGWLDRAPR
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
ttgactcaattcgttgatttcggcctggcggcgcccatcctgaaggcgctcgccgagacc
ggctacgtcacgccgaccccgatccaggcccaggccgtgccgcaggcgatggcgggccgc
gacctctgcggcatcgcccagaccggcaccggcaagaccgccgccttcgcgctcccgatc
ctgcaccggctcgccagcgagacgccgcagcgccgcgcgccccgccgcggctgccgcgtc
ctcgtgctctcgccgacccgggagctcgccagccagatcgccgagagcttcggcgattac
ggcaagttcctgcccttctcgaccacggtcgtgttcggcggcgtcaccatcggccgccag
gagcgggcgctggcgaacggcgtcgacatcctggtcgcgaccccgggccggctcctcgac
ctgatcgaccgccgctcgctcagcctcgacgccgtcgagtacctcgtcctcgacgaggcc
gaccagatgctcgatctgggcttcatccacgcgctgaagcgcatcgtcaccctgctgccg
aaggcgcgccagagcctgttcttctcggccaccatgccgaggaacatcgccacgctggcg
gcccagtacctgcgcgacccggtgcaggtggcggtgaccccggtcgccaccacggccgag
cgcgtggagcagcgggtcgtccacgtccccaccggcgccaagcaggcgctgctggccaca
atcctgcgcgacgcgtcgatcgaccgcgtgctggtcttcacccgcaccaagcacggcgcc
gaccgcgtcgtgcgcggcctggagaaggccggcatcggctcggcggcgatccacggcaac
aagtcccagccccagcgcgagcgggcgctggcggccttccgggctggaatctgccgggtg
ctcgtcgccaccgacatcgcggcccgcggcatcgacgtcgagggcgtcagccacgtggtg
aatttcgacctgccgaacgtgccggaggcctatgtccaccggatcggccgcacggcccgc
gccggggcggacgggctcgccatctcgttctgcaacgacgaggagcgcgcctatctgcgc
gacatcgagcgcctgacccgccagaaggtgcccgagatggcgatcccggagggcttcgtg
cccccgagccgccaggaggccgcggtggccgaggccgaggccgagcgcgaccggcgccag
cccgggccgcggggccagcgtcccggccggccccagggcggccgcccgccgcagacgcag
ggcggacgcccggcggaggcgcggccgcgccccgcgcgccagggccaggacgggcgccag
gcccgcaccaaccaggacgggcgtcccgcccggcagggtcaggatgcgcgccccgcgcat
caccgcgccgagggcccgaaccaccggcaggggcagccgcagcgccgcgaccacgcccgc
ccggcccagggcggccaggacggccgctcgatcggctggctcgaccgcgcgccgcgctga
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