Methylobacterium sp. AMS5: Y590_00020
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Entry
Y590_00020 CDS
T04283
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
meta
Methylobacterium sp. AMS5
Pathway
meta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Y590_00020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meta03019
]
Y590_00020
03400 DNA repair and recombination proteins [BR:
meta03400
]
Y590_00020
Enzymes [BR:
meta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Y590_00020
Messenger RNA biogenesis [BR:
meta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Y590_00020
DNA repair and recombination proteins [BR:
meta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Y590_00020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AMB43265
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All DBs
Position
5042..6889
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AA seq
615 aa
AA seq
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MTARLDEARAALKKTFGYDDFRPGQDEVIGAVLDGTDVFAVMPTGSGKSMTYQLPALVDA
GLTVVVSPLIALMHDQVQQMHAFGIEAATLNSTIAETASRETWRKIRSGELRLLFVSPER
LLMDGCMEALRGAGVRRLAVDEAHCVSQWGHDFRPEYREIARAREALGNVQTLALTATAD
AATRAEIAERLFPAGRPPKTFVHSFDRPNIRLTFQPKDNPTRQLERFLRDRRAESGIIYC
SSRKRVEQLADTLKGDGFNALPYHAGLDQGTRARNQDTFLQEDGVVMTATIAFGMGINKP
DVRYVCHADMPTNIEGYYQEIGRAGRDGLPSDTLTLYGLDDMALRRRQIDEKEISEERRR
VERRKLEAMIALCEGAACRRQSLLGYFGEASERCGRCDLCRGGVSLIDGTVAAQKLLSAI
VRTGQRFGAAYVCDVVHGKESESIRRNGHAALKTFGVGNDKPVAAWRALLRQLFAAGAVA
ENTDGYGGLVMTDKGEAILFGRETIEVRPDPEPKKAEPRSRRAAPRDDEANALSEADEAL
FQHLRGLRATIARAEGIAAFMVFPDRTLIEMARSKPVDLWALRTVHGVGERKREAYGERF
TDTIREFLADAKRAG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacagctcgcctcgacgaggcccgtgccgcgctgaaaaaaaccttcggctacgacgat
tttcgtcccggccaggacgaggtgatcggcgccgtcctcgacggcacggacgtgttcgcg
gtgatgccgacgggctcgggcaagtcgatgacataccagttgccggccctggtcgatgcc
gggctgacggtcgtggtctcgccgctgatcgcgctgatgcacgatcaggtgcagcagatg
cacgccttcggcatcgaggccgcgaccctcaactcgacgatcgcggagacggcgtcgcgg
gagacgtggcgcaagatccgctccggcgaactgcgcctgctgttcgtctcgccggagcgg
ctgctgatggacggttgcatggaggcgctgcgcggggcgggcgtgcggcggctcgcggtg
gacgaagcccactgcgtctcgcaatggggccacgatttccgccccgaataccgcgagatc
gcccgcgcccgcgaggcgctcggcaacgtgcagaccctggcgctcaccgccaccgccgac
gccgcgacccgcgcggagatcgccgagcggctgtttccggcgggacgccctccgaaaacc
ttcgtccactccttcgaccggcccaatatccggctgaccttccagcccaaggacaacccg
acccgccagttggagcgcttcctgcgcgaccgccgcgcggagagcggcatcatctactgc
tcctcgcgcaagcgggtggaacagctcgccgatactctcaagggggacggcttcaacgcc
ctgccctaccatgccgggctcgaccagggcacgcgggcgaggaaccaggacaccttcctc
caggaggacggcgtggtgatgactgccacgatcgccttcggcatgggcatcaacaagccg
gatgtgcgctacgtctgccacgccgacatgccgaccaacatcgagggctattaccaggag
atcggccgcgccggccgcgacgggctgccctccgacaccctgaccctctacggcctcgac
gacatggcgctgcgccgccgccagatcgacgagaaggagatctcggaggagcgccgccgg
gtcgaacggcgcaagctcgaggcgatgatcgctctgtgcgagggcgccgcctgccgccgc
caatcgctgctcggctatttcggtgaggcgagcgagcgctgcgggcgctgcgatctgtgc
cgcggcggcgtctccctcatcgacgggactgtggcggcccagaagctgctctccgccatc
gtccgcaccgggcagcgcttcggcgcggcctatgtctgcgacgtcgtgcatggcaaggag
agcgaatccatccgtcgtaacggtcacgccgcgctcaaaaccttcggcgtcggcaacgac
aagccggtggcggcgtggcgcgccctactgcgccagctcttcgcggccggagcggtcgcc
gagaacaccgacggctatggcggcctcgtgatgaccgacaagggcgaggccatcctgttc
ggccgcgagacgatcgaggtcaggcccgatccggagccgaagaaggccgagccgaggagc
cgccgcgccgcgccgcgcgacgacgaggcgaatgcgctgagcgaggcggatgaagcgctg
ttccagcacctgcggggccttcgcgccaccatcgcgcgggcggagggcatcgccgcgttc
atggtgttccccgaccgcaccctgatcgagatggcgcgctcaaaacccgtcgatctctgg
gcgctccgaaccgtccatggcgtcggcgagcgcaagcgcgaggcttatggcgagcgcttc
accgacacgatccgtgaattcctggccgacgcgaagcgagctggctga
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