Methylobacterium sp. AMS5: Y590_02090
Help
Entry
Y590_02090 CDS
T04283
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
meta
Methylobacterium sp. AMS5
Pathway
meta02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
meta00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Y590_02090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
meta03021
]
Y590_02090
Transcription machinery [BR:
meta03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Y590_02090
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AMB43670
LinkDB
All DBs
Position
complement(425750..427750)
Genome browser
AA seq
666 aa
AA seq
DB search
MATKATERDDADAAQDQPTDGPLLDLTDAAVKRMVKLAKKRGYVTYEEINEVLPDGQVDG
DQIEDVLAQLDDMGIRVVEAEESEEAAPEAKANGEASEEEESTEGGEVAETSGTRAVAVA
APTTREPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQA
IIIWRDELVDGKVLLRDIIDLEATYAGPDARGAPQEAEAEGEESEEAEGAVPPEGGDDED
DMENNVSLAAMEAEIKPRVLETFDNIASNYRKLRKLQNEETELKTGGGTVTSAQTKKQAE
LKDIVVTDVKSLSLNANRIEALVEQLYDINKRLISHEGRLMRAAEHHGVARDEFLRHYQG
YELDPNWMDRVATLGGKGWKNFVERGGRQVADLREQILTLASETGLQIGEYRKIVAMVQK
GEREARQAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
STYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKL
AMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNVVLPIDAAIQSNLRETTTRV
LASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKL
RSFLDN
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgaaggcaaccgagcgggacgatgcggacgccgcccaggatcaaccgacggac
ggcccgctccttgacctgacggatgccgccgtcaagcggatggtcaagctcgcgaagaag
cgcggttacgtcacctacgaagagatcaacgaggtcctcccggacggtcaggtcgacggc
gaccagatcgaggatgtgctcgcgcagctcgacgacatgggcatccgcgtggtcgaggcg
gaggaatccgaggaggctgcgcccgaggccaaggccaacggcgaagcctccgaggaggag
gagagcacggagggcggagaggtcgccgagacctccggcacccgcgccgtcgccgtggcg
gctcccaccacccgcgagccgaccgaccgcacggacgatcccgtgcggatgtacctgcgc
gagatgggctcggtggagctgctctcgcgtgagggcgaaatcgcgatcgccaagcgcatc
gaggctggccgcgaggcgatgatcgcgggtctctgcgagagcccgctgaccttccaggcc
atcatcatctggcgcgacgaactcgtcgacggcaaggtgctgctgcgcgacatcatcgat
ctcgaagccacctatgccggccccgacgcccgcggcgcgccgcaggaggcggaagctgag
ggtgaggaatcggaggaggccgaaggcgccgtcccgccggaaggcggcgacgacgaggac
gacatggagaacaacgtgtcgcttgcggccatggaggccgagatcaagccgcgggttctc
gagaccttcgacaacatcgcctcgaactaccgcaagctgcgcaagctccagaacgaggag
acggagctgaagacgggcggcggcaccgtcacctccgcgcagaccaagaagcaggccgag
ctgaaggacatcgtcgtcaccgacgtgaagtcgctctcgctcaacgccaaccgcatcgag
gcgctggtcgagcagctctacgacatcaacaagcgcctcatctcgcatgagggccgcctg
atgcgcgccgccgagcaccacggcgtcgcccgcgacgagttcctgcgtcactaccagggc
tacgaactcgacccgaactggatggaccgcgtcgccactctaggcggcaagggctggaag
aacttcgtcgagcgcggcggccggcaggtcgcggacctgcgcgagcagatcctgacgctc
gcctcggagaccggcctgcagatcggcgagtaccgcaagatcgtcgccatggtgcagaag
ggcgagcgcgaggctcgccaggcgaagaaggagatgatcgaggccaacctgcgcctcgtg
atctcgatcgccaagaagtacaccaaccgcggcctgcagttcctggacctgatccaggag
ggcaatatcggcctgatgaaggcggtcgataagttcgagtaccgccgcggctacaagttc
tcgacctacgccacgtggtggatccggcaggcgatcacccgctcgatcgccgatcaggcg
cgcacgatccgcattccggtgcacatgatcgagacgatcaacaagattgttcgtacttcg
cgtcagatgctccatgaaatcggacgggagcccacgcccgaggagctggccgagaaattg
gccatgccgctggagaaggtccgaaaagtcttgaagatcgccaaggagccgatctccctc
gaaacgccgatcggcgacgaggaggattcgcatctcggcgacttcatcgaggacaagaat
gtcgttctgccgatcgacgcggcgatccagtcgaacctgcgcgagaccacgacccgtgtc
ctcgcctcgctgacgccgcgcgaggagcgcgtgctgcgcatgcgcttcggcatcggcatg
aacaccgaccacactctcgaagaggtggggcagcagttctcggtgacccgcgagcgcatc
cgccagatcgaggcgaaggccctgcgcaagctcaagcatccgagccggtcgcggaagctt
cgaagcttcctcgacaactga
DBGET
integrated database retrieval system
