Methylobacterium sp. AMS5: Y590_05495
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Entry
Y590_05495 CDS
T04283
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
meta
Methylobacterium sp. AMS5
Pathway
meta03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Y590_05495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meta03400
]
Y590_05495
Enzymes [BR:
meta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Y590_05495
DNA repair and recombination proteins [BR:
meta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Y590_05495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
UB2H
RecG_dom3_C
AAA_30
Cas3-like_C_2
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AMB44342
LinkDB
All DBs
Position
complement(1136302..1139637)
Genome browser
AA seq
1111 aa
AA seq
DB search
MAQSRTAKPRDDQDASPDGGVAPLVPTGALAVALLGFAQAARPLIHVARDGRRLDEIAAV
LRALAPERRVAVYPEWDCLPFDRASPSRGVMGARTGVLRWLTDDRAQPDIVLTTAPALLQ
RVPPPETWESAHIELRVGEPLDSEQLTAQLARLGYILDDRVDEPGEVAVRGRTIDVFPAA
APLPCRVEHDGARITAIRSYDPVSQRSRVETGRLVIDPATEIILDPDSRFALEPFTGQEH
RLARFYPALVTMLDYVPKARLVVEAGVEERAAAFFEQIAEGRESDGAVSPSGSRRDDRSQ
QKPAPDLYLASEEWAERVEARSLAAATTAEAERIAGPVFARERRPEVSFAKALRAALKAG
DRVVLAGPKAPLRRLVRAAAAADERTVRLIDAWADVETAEPGAMLAIEMPVEAGFRVPEA
GATVIAAADLFGPLAAGAGRRAAVLPIGEVELRVGDVAIDRDHGLCLFEGLEAIRAGQED
EEDALRLRFADDAILMVPVSQADRIWRYGSEAEAVTLDRLDGGTWARRRLETEATLAKAA
RAMLKAAQERREAHAPQIVPPEREMERFAAGFGYPLTDDQAGAVEETLADLARETPMDRL
VCGDVGFGKTEVALRAAAAAIFAGRQVAVMAPTTVLVRQHVETFRRRFARFGIEVAHLSR
LVSPAEARRVKQGLADGSVRLVVGTQALAGRGVSFHDLGLAIIDEEQRFGAKTKASLRKA
AGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVIAAFEETTLAAALRRE
HRRGGQSFVVCPRIEDIAPMAKRLRALVPGLDVVTAHGEMKPAEMDDAMVRFADGEGDVL
LATSIIESGLDVPRANTMLVWDAERFGLAQLHQLRGRVGRGQRRGVVYLFGHPDKPLSPS
TEKRLRTLEALDRLGAGFAISARDLDLRGAGDLVGDDQSGHVKLVGLGLYQHLLQLALRA
AKGEAAEDWSPEVRIGLNGRVPADYIPEPEIRLSLYTRLLRLRAEAEIDALRDEIEDRFG
PLPESVDALFTLARLRIGCLALGIVRLSGGPQGIAADFHPDRQAPVIPVSDEITVRDRRI
VIRGGCDDPVERGARAAVFLRRLHEARDRRG
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggcacagtccaggaccgccaagccccgagacgaccaggatgcgagcccggatgggggc
gtcgctccgctcgttccgacgggagccctggcggtggctctgctcggtttcgcgcaagcc
gcgcggccgttgatccacgtggcccgcgatggccgccgcctcgacgagatcgccgcggtc
ctgcgcgcgctggcgccggagcggagggtggctgtctatcccgaatgggattgcctgccc
ttcgaccgcgcttcgccctcgcgcggtgtcatgggcgcgcgcaccggcgtgctgcgctgg
ttgaccgacgaccgggcacaaccggacatcgtcctgaccaccgcccccgcgctgctgcag
cgcgtgcctccgccggaaacgtgggaatcggcccatatcgagctgcgcgtcggcgagccg
ctcgattcggagcagctgacggcgcaactggcacggctcggctatatcctcgacgatcgc
gtcgatgagcccggcgaggtggcggtccggggacggaccatcgacgtgttcccggccgcc
gcaccgcttccctgccgggtcgagcatgacggcgcgcgcatcactgcgatccgctcctac
gatccggtgtcgcagcgctcccgcgtcgaaaccgggcggctggtgatcgatccggccacc
gaaatcatcctggacccggattcgcgcttcgccctggagccgttcaccggacaggagcac
cggcttgcccggttctatcccgcgctcgtgacgatgctcgattacgtgcccaaggcgcgc
ctcgtggtcgaggccggggtggaggagcgtgccgccgcgttcttcgagcagatcgccgag
ggccgcgagtcggacggggcggtgtcaccttccgggagccggcgggacgaccgatcccaa
cagaagcccgcaccggatctctatctcgcctccgaggaatgggcggaacgggtcgaggca
cgcagcctcgcggcggccacgaccgccgaggcggagcggatcgcagggccggtttttgcc
cgcgagcgccgccccgaggtctccttcgccaaagccctgcgcgctgcgctgaaagcgggc
gatcgcgtcgtgcttgccggccccaaggcgccgctgcgccgcctcgtgcgcgcggccgcc
gcggccgacgagcgaaccgtgcgcctgatcgatgcctgggccgacgtcgagacggcggag
cccggcgcgatgctggcgatcgaaatgccggtcgaggcggggtttcgcgtgccggaggcc
ggtgcgacggtgatcgccgcggcggatctgttcgggccgctggccgcaggcgcggggcgg
cgggccgccgtgctgccgatcggcgaggtcgagctgcgggtcggcgatgtagcgatcgat
cgcgatcacggcctgtgcctcttcgaggggctggaggcgatccgcgccggtcaggaggac
gaggaggacgcgctgcgtctgcgttttgctgatgacgccatcctcatggtgccggtgagc
caggcggaccggatctggcgctacggctctgaggccgaagccgtgaccctcgaccggctc
gacggcggcacctgggcccggcggcggctggagacggaggcgacgctcgccaaggcggcg
cgggcgatgctgaaggccgcgcaggagcgccgggaggcccacgccccgcagatcgtgccg
cccgagcgcgagatggaacggttcgcagccggtttcggctatccgctcaccgacgatcag
gccggggcggtggaggagacgctggccgatctcgcccgcgagacgccgatggaccggctc
gtctgcggcgatgtcggcttcggcaagaccgaggtggccctgcgcgccgcggcggcggcg
atctttgccggacggcaggtcgccgtcatggcgccgacgacggtgctggtccgccagcat
gtcgagacgttccggcgccggtttgcccggttcggcatcgaagtggcgcatctttcgcgc
ctcgtgtcccccgccgaggcaaggcgggtgaagcagggcttggccgatggcagcgtccgc
ctcgtcgtcggcacccaggcgctcgccgggcgcggcgtgtcgttccacgatctcggcctt
gccatcatcgacgaggaacagcgcttcggggccaagaccaaggcgagtctgcgcaaggcg
gcgggcgacgcccacatcctcacgttgagcgcgacgccgatcccgcgcacgctccaggcg
gcgatggtcggcctgcagagcctcagcgtgatcgctacgcccccggcggtgcgccagccg
atccgcacggtgattgccgctttcgaggagacgacgctggccgcggcgctgcggcgtgag
caccgccgcggtgggcagagcttcgtggtctgcccgcgcatcgaggacatcgcgccgatg
gccaagcgcctgcgtgcgctcgtgccggggctcgacgtggtgacggcgcatggcgagatg
aagcccgccgagatggacgacgcgatggttcgcttcgccgacggcgagggcgatgtgctg
ctcgccaccagcatcatcgagagcgggctcgacgtgccgcgcgccaacaccatgctggtc
tgggacgcggagcggttcggcctcgcgcagttgcaccagttgcgcggtcgcgtcgggcgc
gggcagcggcgcggggtggtgtacctgttcgggcatcccgacaagccgctcagcccctcg
acggagaagcggttgcgcacgctggaggcgctcgaccggctcggggcgggctttgccatc
tccgcccgcgacctcgacctgcgcggggcgggcgacctcgtcggcgacgaccaatctggc
cacgtcaaactcgtggggctcggcctctaccagcacctgctgcaactggccctgcgcgcg
gccaagggcgaggcggccgaggattggagcccggaggtgcggatcggtctgaacggccgt
gtgcccgccgactacatccccgaacccgaaatccgcctgagcctctacacgcgcctcctg
cgcctgcgcgccgaggccgagatcgacgcgctgcgcgacgagatcgaggaccgcttcggg
cccctgccggaatcggtggacgcgttgttcaccctggcgcgcctgcggatcggatgcctc
gccctcggcatcgtccgcctcagcggcggtccgcaggggatcgcggccgacttccatccg
gacaggcaggcaccggtgatcccggtctccgacgagatcacggttcgggatcggcgtatc
gtcatccgtgggggctgcgacgacccggtcgagcgcggcgcacgcgccgccgttttcctg
cgccgtctccatgaagcccgcgaccggcgtggttga
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