Methylobacterium sp. AMS5: Y590_20045
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Entry
Y590_20045 CDS
T04283
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
meta
Methylobacterium sp. AMS5
Pathway
meta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Y590_20045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meta03019
]
Y590_20045
03016 Transfer RNA biogenesis [BR:
meta03016
]
Y590_20045
Enzymes [BR:
meta01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Y590_20045
Messenger RNA biogenesis [BR:
meta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Y590_20045
Transfer RNA biogenesis [BR:
meta03016
]
Prokaryotic type
tRNA degradation factors
Y590_20045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AMB47239
LinkDB
All DBs
Position
complement(4321609..4323846)
Genome browser
AA seq
745 aa
AA seq
DB search
MFDVQREELIWGDRKLVLETGKTARQADGSVVATYGETTVLATVVAGKEPKAGIDFLPLT
VNYQERAYAAGRIPGGYFKREGRPSEKETLVSRLIDRPIRPLFVEGWRNDTQVVVTVLSH
DLENDPDIVAMVAASAALTLSGVPFMGPIGAARVGYLNGGYKLNPLVTEVAESTLDLVVA
GTQDAVLMVESEAKELSEDVMLGAVMFGHKHFQPVIEAIIRLAEKAAKEPRDFTAPENAE
VEAAVLAVAETELREAYKKTVKQERYAAVDAVKAKVVAALCPAEGEQKFAPEKVKAAFKE
AQSKVVRWNILDTGSRIDGRDVKTVRSIVSEVGVLPRAHGSSLFTRGETQALVVATLGTG
EDEQFIDALEGTYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPVLPPAH
EFPYTIRVVSEITESNGSSSMASVCGGSLSLMDAGVPLRRPVAGIAMGLILEGERFAVLS
DILGDEDHLGDMDFKVAGSEEGITSLQMDIKIAGITEEIMKIALAQAKDGRAHILGEMSK
ALTAARPELGEYAPRIETMQIPTDKIRDVIGTGGKIIREIVEKTGAKINIEDTGIVKIAS
SDGKAIKAAYNWIRSIVAEPEAGTIYDGTIVKIMEFGAFVNFFGAKDGLVHISELAAQRV
AKVGDVVKEGQKVKVKFLGADERGKIRLSMKVVDQETGEDLTEKLKAERAERGEPEREER
SDRGDRGDRGPRRDRGERRRESSGE
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgtacaacgtgaagagctgatctggggcgaccgcaagctcgtcctcgagacc
ggcaagaccgcccgccaggcggacggctccgtggtcgccacctacggcgagaccaccgtg
ctcgccaccgtggtcgcgggcaaggagcccaaggccggcatcgacttcctgccgctcacc
gtgaactaccaggagcgcgcctacgccgccggccgcatccccggcggctatttcaagcgc
gaaggccgtccctccgagaaggagacgctggtctcccgcctgatcgaccgcccgatccgt
ccgctcttcgtcgagggctggcgcaacgacacccaggtcgtcgtcaccgtcctctcccac
gatctcgagaacgatcccgacatcgtcgcgatggtcgcggcctcggccgccctcaccctc
tcgggcgtgcccttcatgggcccgatcggcgcggcccgcgtcggctacctcaatggcggc
tacaagctgaacccgctggtgacggaagtcgccgaatcgaccctcgacctcgtcgtcgcc
ggcacccaggacgcggtgctgatggtcgagtccgaggccaaggaactctccgaggacgtg
atgctcggggccgtgatgttcggccacaagcacttccagccggtcatcgaggcgatcatc
cgtctggccgagaaggccgccaaggagccgcgcgatttcaccgcgccggagaacgccgag
gtcgaggccgccgttctcgccgttgccgagaccgagctgcgcgaggcctacaagaagacg
gtcaagcaggagcgctacgccgccgtcgacgccgtgaaggcgaaggtcgtggccgcgctc
tgcccggccgagggcgagcagaagttcgcgcctgagaaggtcaaggccgccttcaaggaa
gcgcagtccaaggtggtccgctggaacatcctcgacaccggaagccgcatcgacggccgt
gacgtaaaaacggtccgctcgatcgtctccgaggtcggcgtgctgccccgggcccatggt
tcgtcgctgttcacccgcggcgagacccaggcgctggtcgtggcgaccctcggcaccggc
gaggacgagcagttcatcgacgcgctggaggggacctacaaggagcgcttcctgctccac
tacaacttccctccctactccgtcggcgagaccggccgcatgggttcgcccggccgccgc
gagatcggccatggcaagctcgcctggcgcgcgatccggcccgttctgccgccggcccac
gagttcccgtacacgatccgcgtggtctccgagatcaccgagtcgaacggctcgtcctcg
atggcgagcgtctgcggcggctcgctgtcgctgatggatgcgggcgtgcccctgcgccgc
ccggtcgccggcatcgccatgggcctcatcctcgaaggtgagcgtttcgccgtgctgtcc
gacatcctcggcgacgaggatcacctcggcgacatggacttcaaggtggccggctcggag
gagggcatcacctccctccagatggacatcaagatcgccggcatcaccgaggagatcatg
aagatcgccctcgcccaggccaaggacggccgcgcccacatcctgggcgagatgtccaag
gccctgaccgcggcccgtccggagctcggcgagtacgcgccgcgcatcgagacgatgcag
atccccaccgacaagatccgtgacgtgatcggcaccggcggcaagatcatccgcgagatc
gtcgagaagaccggcgccaagatcaacatcgaggataccggcatcgtcaagatcgcctcc
tccgacggcaaggcgatcaaggcggcctataactggatccgctccatcgtcgccgagccc
gaggcgggcacgatctacgacggcacgatcgtcaagatcatggagttcggcgccttcgtg
aacttcttcggcgccaaggacggcctcgtccacatctcggagctcgccgcccagcgcgtc
gccaaggtcggcgacgtcgtgaaggagggccagaaggtcaaggtgaagttcctcggtgcc
gacgagcgcggcaagatccgcctctcgatgaaggtcgtcgatcaggagaccggcgaggac
ctcaccgagaagctgaaggccgagcgggcggagcgcggcgagccggagcgcgaggagcgc
agcgaccgcggtgatcgtggcgaccgcggcccccgccgcgaccgcggcgagcgccgccgg
gaatcgtcgggcgaataa
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