Methylobacterium sp. AMS5: Y590_20775
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Entry
Y590_20775 CDS
T04283
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
meta
Methylobacterium sp. AMS5
Pathway
meta03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Y590_20775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meta03400
]
Y590_20775
Enzymes [BR:
meta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Y590_20775
DNA repair and recombination proteins [BR:
meta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Y590_20775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
SecA_DEAD
AAA_16
RecG_dom3_C
AAA_22
PBP_like_2
Motif
Other DBs
NCBI-ProteinID:
AMB47386
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All DBs
Position
4484720..4488310
Genome browser
AA seq
1196 aa
AA seq
DB search
MAKPQPKPPAPKPQTARFALPKSAPLTKALDAIKRGDSPTLASVPDGFDALVAADLARAL
SGSFEGPAVLVHVARDSGRSNAFQNALKFVAPEIEAMSVPAWDCQPYDRVSPNGAIAAQR
MTALSRLTRSRSSEEKPRILCTTVNALVQRVPPRSRVAVETFSAAIGNVVPMDKVVAWVE
ANGFLRTGTVRDTGEYAVRGGILDLSPPGLPNPIRLDFFGDTLESIRAFDPETQRTVGSL
RSLDLVPMSEVQLTTETIRRFRQGYLSSFGAATRDDRLYETVSEGRRYAGLEHWMPLFYD
GLDTLFDYLGDVPMLFDPQVEEAATERLALIQDYFQAREAALKNPQSGVAPYKPLPPRAL
YLTPNEWKSKIEAGTVARLTPFAMPDSDALAVIDCGARAGRSFAPERADDAASVFDAAVA
HIRDLQASGHHVILGSWSEGSRDRLCGVLTDHGLKKPTVINTFAAVNALKRGTDVAVAVW
GLESGFTLDRLAVVAEGDILGDRLVRQKRKSKRPQDIILEVQALQPGDLVVHADHGIGRF
VTLKTVTAAGAPHDCLELQYAGGLLLLPVENIELLTRYGSEDTEVALDRLGGGAWQARKA
KMKRRILEMAGDLIKIAAARFVKSAPSLKAPEGLYEEFAARFAFQETEDQANAIDAVLDD
LNAGRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVVVPTTLLARQHFRTFAERFKG
LPINVAQLSRFVSAGDQRQTRAGLSEGQVDIVVGTHALLAKNVAFKDLGLIIVDEEQHFG
VAHKERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIATPPMDRLAVRTFVTPFDP
LLVREALLRERYRGGQSFYVAPRIEDLAEVKRFLDTEMPETTVAVAHGQMAAGQLEDVMT
AFYEGKYDVLLSTTIIESGLDIPTANTLIVHRADMFGLAALYQLRGRVGRSKARAYALFT
TPANRQLTAQAEQRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHIKEVGYELY
QQMLEDAVTALKAGIEEPVEEAWSPTIALGAPVTIPEDYVEDLTVRLGLYRRLSTLENDA
EMESFGAELIDRFGPLPPEVEQLLKIVTIKILCREANIEKVEAGPKGVVVHFRNRSFANP
QGLAAMVVEQGSFAKVRPDMSVVFIRELDGIPRRLKETTQILRGLVTIAKRAKKAA
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccccaacccaagccacccgctccgaagccgcagaccgcccgcttcgccctg
ccgaaatcggcgcccctgaccaaggcgctcgatgcgatcaagcgcggcgacagcccgacg
ctggcgagcgtccccgacggcttcgatgcgctggtggccgccgacctcgcccgcgcgctg
tccggctcgttcgagggaccggcggtgctggtccacgtcgcccgcgattccggccgctcc
aacgccttccagaacgcgctgaaattcgttgcccccgagatcgaggcgatgagcgttccg
gcctgggattgccagccctacgaccgcgtctcgccgaacggggccatcgccgcccagcgc
atgaccgcgctctcacggctgacccgctcgcgctcgtcggaggagaagccccgcatcctc
tgcaccaccgtcaacgccctggtgcagcgggtgccgccgcggtcgcgcgtggccgtcgag
accttctcggcggcgatcggcaacgtggtgccgatggacaaggtcgtggcctgggtggaa
gcgaacggcttcctgcgcacgggaacggtgcgggacacgggcgaatatgccgtgcgcggc
ggcatcctcgacctgtcgccccccggcctgccgaacccgatccgcctcgatttcttcggc
gacacgctcgaatcgatccgcgccttcgatcccgagacgcagcgcacggtggggagcttg
cgctccctcgatctcgtgccgatgagcgaggtgcagctcaccaccgagacgatccggcgc
ttccgccagggctacctgtcgagcttcggcgcggcgacccgcgacgaccggctctacgag
acggtgagcgagggccggcgctatgccggcctcgagcactggatgccgctgttctacgac
ggcctcgacaccctgttcgactatctcggcgacgtgccgatgctgttcgacccgcaggtg
gaggaggcggccaccgagcggctcgctttgatccaggactatttccaggctcgcgaagcc
gcgctgaagaacccgcagagcggcgtcgcgccctataagccgctgccgccgcgcgcgctc
tacctcacgcccaacgagtggaagagcaagatcgaggccggcacggtggcccggctcacc
cccttcgcgatgccggattccgacgcgcttgcggtgatcgattgcggcgccagggccggg
cgaagcttcgcgcccgagcgggccgacgacgcggccagcgtgttcgacgcggcggtcgcg
catatccgggatctccaggcatccgggcatcacgtgatccttggatcctggtccgagggc
tcgcgcgaccggctctgcggcgtgctgaccgaccacgggctcaagaagccgacggtgatc
aacaccttcgccgcggtcaacgcgctcaagcgcggcaccgacgtggcggtcgcggtctgg
gggctggaatccggcttcaccctggaccggctcgcggtggtggccgagggcgacatcctg
ggtgaccggctggtgcgccagaagcgcaagtccaagcgcccgcaggacatcatcctcgag
gtgcaggcgctccagcccggcgatctcgtggttcatgccgaccacggcattggccgcttc
gtcacgctcaagaccgtcaccgcggcgggcgcgccgcacgattgcctcgaactgcaatat
gccggcggcctgctgctgctgccggtcgagaacatcgaactcctgacccgctacggctcc
gaggatacggaggtcgcgctcgaccgcctgggcggtggcgcctggcaggcccgcaaggcc
aagatgaagcgccgcatcctcgagatggccggcgacctcatcaagatcgccgccgcgcgg
ttcgtgaagtccgcccccagcctcaaggcgccggaggggctctacgaggaattcgctgcc
cgcttcgccttccaggagaccgaggatcaggccaacgccatcgatgcggtgctcgacgac
ctcaacgcggggcgtccgatggaccggctggtctgcggcgatgtcggcttcggcaagacc
gaggtggccctgcgcgccgccttcgccgcggcgatctccggcaagcaggtggcggtggtg
gtgcccaccacgcttctcgcccgccagcattttcgcacgtttgccgaacggtttaagggc
ctgccgatcaacgtcgcgcaactctcccgcttcgtctctgccggcgatcagcggcagacc
cgcgccgggctcagtgagggccaggtcgatatcgtcgtcggcacccacgcgctcttggcc
aagaacgtcgcgttcaaggatctcggcctcatcatcgttgacgaggagcagcatttcggc
gtcgcccacaaggagcggctcaaggcgctccaggccgacgtgcacgtgctgacgctctcg
gccaccccgattccgcgcacgctgcagcttgccatgacgggcgtgcgcgaactctcgatc
atcgccacccccccgatggaccggctggcggtgcgcaccttcgtgacgccgttcgatccg
ctgctggtccgcgaggcgctgctgcgcgaacgctatcgcggcggccagtcgttctacgtc
gctccccgcatcgaggatctggccgaggtcaagcgcttcctcgataccgagatgcccgag
accaccgtcgcggtcgcccacggccagatggcggcgggccagctcgaagacgtgatgacg
gcgttctacgagggcaagtacgacgtgctgctctcgaccacgatcatcgaatccggcctc
gacatcccgaccgccaacacgctgatcgtgcaccgggccgacatgttcgggcttgccgcg
ctctaccagttgcgcgggcgcgtcggccgctcgaaggcacgggcctacgccctgttcacg
acgccggccaaccgccagctcacggcccaggccgaacagcgcctgaaggtgctccagagc
ctcgatacgctgggcgccggcttccagctcgcgagccacgatctcgacatccgcggcgcc
ggcaacctgctgggcgatgcccaatccggccacatcaaggaggtgggctacgagctctac
cagcagatgctggaggatgcggtgaccgccctcaaggccggcatcgaggagccggtggag
gaagcatggtcgccgaccatcgcgctcggcgctccggtcacgatccccgaagactacgtc
gaggacctgaccgtccggctcggcctctacaggcgcctctcgaccctcgagaacgatgcc
gagatggagagcttcggcgccgagttgatcgaccgcttcggcccgctgccgccggaggtg
gaacagctcctgaagatcgtgaccatcaagatcctgtgccgcgaggccaatatcgagaag
gtcgaggcgggccccaagggcgtggtcgtccacttccggaaccgctccttcgccaacccg
caggggctcgcggccatggtcgtggagcagggctccttcgccaaggtgcggcccgacatg
agcgtcgtgttcatccgcgaactcgacggcatcccgcggcggctgaaggagacgacgcag
atcctgcgcgggctcgtcacgattgccaagcgagccaagaaggccgcgtga
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