Methanosphaera sp. BMS: AW729_04565
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Entry
AW729_04565 CDS
T05504
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
metb
Methanosphaera sp. BMS
Brite
KEGG Orthology (KO) [BR:
metb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
metb03016
]
AW729_04565
Enzymes [BR:
metb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AW729_04565
Transfer RNA biogenesis [BR:
metb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AW729_04565
Prokaryotic type
tRNA splicing ligases
AW729_04565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWX32418
LinkDB
All DBs
Position
1294440..1295888
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AA seq
482 aa
AA seq
DB search
MVTKADLEKVRDGVYEIASSKEKGMRVSARVYMDDESVKTIDDGTLQQVANVAHLEGIQK
RSIGLPDIHFGYGFSIGGVAAFAENNGVISPGGVGFDINCGVRLVKTNLTKEDIAPYMND
LVEDLFKKIPSGLGSNGIKHLKETEIDEVLQNGAKWAVENGYGWDEDLKYLEENGCMDIA
NPDEVSSKAKRRGIPQLGSLGSGNHFLEIQTIGDIYDEDTAKVYGLEKDQVVVLIHTGSR
GCGYQICADNLREMDKVAKRLKMDIPDRQLACAPIDSEEAQKYLQAMACGANYAWTNRQM
IQHWLRESFETILKQDADSLGMNVLYDVAHNIVKREQHKIGKMNKTVYVHRKGATRAFGP
GRKEVTQDYRDVGQPVLIPGTMGTASYVLAGTDTAMEETFGSTAHGAGRMLSRSGAKKEY
TPEEISQQLAKKGIVLKANSPSVIAEEAPGAYKDVDSVVKTANDTGISKLVAQMLPLGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggtaactaaagctgatttagaaaaagtaagagacggagtatatgaaattgcatccagc
aaggaaaaaggtatgagagtatctgccagagtatatatggatgatgaatccgtaaagacg
atagatgacggtacccttcaacaagtagctaacgtagcacacctagagggtatacagaaa
agatccattggacttccagatattcacttcggatacggtttcagtatcggtggagtggca
gcatttgccgaaaacaacggtgtcatcagcccaggtggtgtgggttttgacataaactgt
ggagtaaggcttgtcaagacaaacctaaccaaagaggacattgcaccatacatgaatgac
ctggttgaagacctgttcaaaaagataccatcaggtctaggaagcaacggcataaaacac
cttaaggaaacagagattgatgaagtacttcaaaacggtgccaaatgggccgtggaaaac
ggttacggatgggatgaagacctcaaatacctggaagaaaacggttgtatggacatagca
aatcctgatgaggtatcatcaaaggcaaaacgtcgtggcattccacaactcggttctctc
ggtagcggtaatcatttcctggaaatccagacaattggagacatatatgatgaggatacc
gcaaaggtatatgggcttgaaaaggaccaggtagtcgttctcatccatacaggttctcgt
ggctgcggttaccagatatgtgccgacaacctgagggagatggataaggtagcaaaaaga
ttgaagatggacatacctgacagacaacttgcatgtgcaccgatagactcagaagaggca
cagaaatacctgcaggcaatggcatgtggggcaaactatgcatggaccaaccgtcagatg
atccagcactggctacgtgaatcatttgagacaatccttaaacaggacgcggacagcctt
ggcatgaacgtgttatatgatgtggcacacaatatagtaaaacgtgaacagcataagata
ggcaagatgaacaagactgtctacgtccaccgtaaaggtgcaacaagggcattcggtcca
ggacgtaaggaggttacacaggattatcgtgatgtgggacaacctgttctaatacctggt
acaatgggtactgcttcatatgtacttgcaggtaccgatactgcaatggaggaaaccttc
ggttcaactgctcacggtgccggcaggatgctttcaagaagtggtgctaagaaagagtac
acacctgaagagatatcacagcaattagccaagaagggcattgttcttaaggccaacagt
ccatccgttatagccgaagaagcacctggagcatataaggatgttgacagtgttgttaaa
acggcaaatgacacgggtatcagcaaacttgttgcacagatgttaccgcttggtgtgatt
aaggggtaa
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