KEGG   Methanosphaera sp. BMS: AW729_10375
Entry
AW729_10375       CDS       T05504                                 
Name
(GenBank) flap structure-specific endonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
metb  Methanosphaera sp. BMS
Pathway
metb03030  DNA replication
metb03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:metb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AW729_10375
   03410 Base excision repair
    AW729_10375
   03450 Non-homologous end-joining
    AW729_10375
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:metb03032]
    AW729_10375
   03400 DNA repair and recombination proteins [BR:metb03400]
    AW729_10375
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:metb04147]
    AW729_10375
DNA replication proteins [BR:metb03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    AW729_10375
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     AW729_10375
DNA repair and recombination proteins [BR:metb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AW729_10375
Exosome [BR:metb04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   AW729_10375
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc FliD_C HHH_5 EMC3_TMCO1
Other DBs
NCBI-ProteinID: AWX33469
UniProt: A0A2Z4LB00
LinkDB
Position
2753604..2754590
AA seq 328 aa
MGVKFKDITSPEFIELNDLGGKLLTVDASNVIYKFLSSMRQPDGSPLKDLNGNITSHLNG
IMFQTSTLIAKGIKPIYVFDGKAPELKKKTQEERINIKKEAQEKYEEAKKAGDYETARKY
ASRTPYLNKEIIDSSKKLLDLMGLPYVQAKTEGEAQASYMVAEGDAWAVVSQDYDCLQFG
ASRMLKNFKLSSRQSKDLQVISLEKTLNELNVTREQLVDIAILVGTDFNAGIHGIGPKKG
LKLIQKYGNLETALKKLDKTIEEDYNQIREIFLHPDVVTDYDLKFRNPKREQLIDFLCGD
HDFTEERTFAAIDKLVHETAQTSLEQWF
NT seq 987 nt   +upstreamnt  +downstreamnt
atgggagtaaaatttaaggatataacatcaccggagttcatagaattgaatgatttgggt
ggaaaattattgactgtggatgcctcaaatgtaatctataagttcctgtcatcaatgaga
caaccggacggatcaccacttaaggatttaaatggaaacataacatctcacctaaacggg
ataatgtttcaaacgtctacactgatagcaaagggtataaagccaatatacgtctttgat
gggaaagcacccgagttaaaaaagaaaacacaggaagaacgtataaacatcaaaaaagag
gcacaggaaaaatatgaagaagccaaaaaagccggtgactatgaaaccgctagaaaatat
gcctccagaacaccctatttgaataaggaaataatagactcctcaaaaaaactgcttgac
ttgatgggacttccatatgtacaggcaaaaacagaaggggaagcacaagcatcatatatg
gtggctgaaggtgatgcatgggctgttgtcagtcaggactatgattgcctgcagtttgga
gcatcaagaatgcttaaaaactttaaactgtcatccagacaatccaaggatttgcaggta
atatcactagagaaaacattgaatgaattaaatgtaactcgagaacaactggttgacata
gcaatacttgttggtacggatttcaatgcaggaatacatggaataggaccaaagaaagga
cttaaattaatacaaaaatatggtaaccttgaaaccgccctgaaaaaattagataagaca
atagaagaagattataatcagataagggaaatattcttacatccggatgttgtaacggat
tatgatttaaaattcagaaatccaaaacgagaacagttgattgatttcttatgtggggat
catgactttaccgaagagcgaacatttgcggctattgataaactggttcatgaaaccgct
cagacaagtctagaacaatggttctga

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