Methanothermobacter sp. CaT2: MTCT_0611
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Entry
MTCT_0611 CDS
T04009
Name
(GenBank) exosome complex RNA-binding protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
metc
Methanothermobacter sp. CaT2
Pathway
metc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTCT_0611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metc03019
]
MTCT_0611
Messenger RNA biogenesis [BR:
metc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MTCT_0611
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MTCT_0611
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
BAM69860
UniProt:
T2GIQ3
LinkDB
All DBs
Position
complement(601124..601927)
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AA seq
267 aa
AA seq
DB search
MDIIPEITRKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGV
KPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLE
KLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKM
QPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTR
DDVLKAVSIAVEKVPQLIEYLDKSMTP
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atggatataatacctgaaattacaagaaagagtataacggaccttataaataataaggaa
cgcattgatggaaggtcacttcatgagttcagggacatatccatcgaaacaggggtgata
tccaaggctgagggttcctcaagggtgaaacttggaaacacccagataattgtgggtgtg
aagccccagataggcgaacccttccctgacacacctgagatgggtgtaatactcaccaac
tccgagctccttccaatggcatcaccgacctttgagcctggaccccctgatgagaggtca
gtggagctgtcaagggttgtggacagatgcataagggagagccggatgatagaccttgag
aagctctgcatcatagagggcagcaaggtctggatgctgttcctggacctgcacatcata
gactatgatggcaacctctttgacgcagcggtccttgcaaccgtggcagccctgctggat
acaaggatacctgcagccgaggttgaggatggtgaggtcgttatcaacagggagaagatg
cagccactccctgtcaacaggaaggccctcatgtgcaccttcgccaagataggaaacgag
atcgtgctcgacccctccctcgaggaggaggacatactcacagcaaggatatccataggt
gttactgaggagggctccatatgcgccatgcagaagggtggtgaggggccactcacaagg
gatgatgtccttaaggcagtctcaattgcagtggagaaggtgccccagctcattgagtac
cttgacaagtcaatgactccctaa
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