Methanothermobacter sp. CaT2: MTCT_0613
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Entry
MTCT_0613 CDS
T04009
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
metc
Methanothermobacter sp. CaT2
Pathway
metc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTCT_0613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metc03019
]
MTCT_0613
Messenger RNA biogenesis [BR:
metc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MTCT_0613
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MTCT_0613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
ECR1_N
KH_6
KH_1
RRP4_S1
S1
RRP40_S1
KH_2
KH-I_KHDC4-BBP
GshA
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
BAM69862
UniProt:
T2GHJ3
LinkDB
All DBs
Position
complement(602648..603583)
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AA seq
311 aa
AA seq
DB search
MLLVNEKDLVVPGQVLAENEYFPGRGTFKEDNRICSSFVGLVSVRNKKINVIPLQSKYIP
KRGDVVIGEITDIRFSMWGLDINSPYTGLLPASEVFGKDKRELESVFDIGDVLLLRVVDV
DEVKKVKLGLKGRGLGKFRDGILVYITPTKVPRLIGKRGSMINMVKEKTHCDIVVGQNGV
VWIKGEPDMERIAEKVVLMIDREAHTSGLTDRVRELLDRLTGVEPEIQVEESEGTEKPET
PESEDFEEASDYSEDVEVSPESEDIEEVSDESEDLEVESEDVEEGTDTPAAEEDDGEAGD
AEVKDENNSER
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
gtgctacttgtaaatgaaaaggacctggttgttccaggtcaggttctggcagagaacgaa
tatttccctggaaggggaaccttcaaagaggataacaggatatgttcatcctttgtggga
ctcgtttctgttagaaacaagaagataaatgtgataccacttcagagcaagtacatcccc
aagaggggggatgtggtgatcggggagataactgacatcagattctcaatgtggggactt
gacataaactcgccctacacaggtctcttaccggcctctgaggtctttggcaaggataaa
agggaacttgaaagtgtcttcgatataggggacgttctgcttttgagggttgtggatgtt
gatgaggttaagaaggtgaagcttggcctcaagggccgcggccttggaaagttcagggac
ggtatcctggtttacataacacccacaaaggtgccaaggctgataggcaaaaggggatca
atgataaacatggtcaaggagaagacccactgcgatatcgtggttggccagaacggtgtt
gtctggatcaagggtgaacccgacatggagaggatagccgagaaggtggtcctcatgata
gaccgtgaggcccacacctcaggactcaccgaccgtgtgagggaactcctcgacaggctt
acaggagtggaacctgagattcaggttgaggagtctgaagggacagaaaaacctgaaacc
ccggagtctgaggattttgaggaagcatctgattattctgaggatgtggaggtgtctccg
gagtctgaggacattgaggaagtatctgatgagtctgaagaccttgaagtggaatctgaa
gatgtggaagaaggaacagacacccctgctgctgaagaggatgatggggaagccggggat
gcagaagttaaggatgagaataattccgagaggtga
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