Methanothermobacter sp. CaT2: MTCT_1195
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Entry
MTCT_1195 CDS
T04009
Name
(GenBank) exosome complex RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
metc
Methanothermobacter sp. CaT2
Pathway
metc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MTCT_1195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metc03019
]
MTCT_1195
Messenger RNA biogenesis [BR:
metc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MTCT_1195
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MTCT_1195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
A2L_zn_ribbon
Zn_ribbon_TiaS
OB_RRP5_4th
ECR1_N_2
HypA
DmmA-like_C
Zn_Tnp_IS91
Defensin_5
DUF5817
Motif
Other DBs
NCBI-ProteinID:
BAM70443
UniProt:
T2GL62
LinkDB
All DBs
Position
complement(1171505..1172074)
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AA seq
189 aa
AA seq
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MKVKSGDMVFPGDFLAVSEEVLPSEGTYDEDGKIKSLVVGEVSRDDRNKSIKVISKLNTP
PTLKRGSRVIGEVIDVRGQRALVRIHSIKGNRRALATYFVGGVHVSQARKGYLSKLTDAF
RIGDIVEARVTKIMGLDGIDLQTSGRDLGVIKAMCTRCRHFMEVNGRDEVRCPNCENREK
RKLSVNYEG
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttaaatctggggatatggtttttcccggagattttttggctgtaagcgaagag
gtcctcccctctgaggggacctacgatgaggatggtaagataaaatcccttgtcgttgga
gaggtttcaagggatgaccggaataagagcataaaggtaatatcaaagctgaacacacca
ccaacacttaaaaggggttcaagggtcattggagaggtcattgatgtaaggggtcagcgg
gcccttgtgaggatacacagcatcaagggcaacaggagagcccttgcaacatacttcgtt
ggaggagtccacgtttcacaggcaaggaagggctacctttcaaagctaacagacgccttc
aggataggggacatcgtggaggcaagggtcacaaagatcatgggcctcgatggcatagat
ctacagacatcaggccgtgaccttggggttatcaaggcaatgtgcacccgctgcaggcac
ttcatggaagtgaacggcagggacgaggtcaggtgcccgaactgtgaaaaccgggaaaaa
aggaagctatcagtgaattatgaaggttaa
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