Methanothermobacter sp. CaT2: MTCT_1456
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Entry
MTCT_1456 CDS
T04009
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
metc
Methanothermobacter sp. CaT2
Brite
KEGG Orthology (KO) [BR:
metc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
metc03016
]
MTCT_1456
Enzymes [BR:
metc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MTCT_1456
Transfer RNA biogenesis [BR:
metc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MTCT_1456
Prokaryotic type
tRNA splicing ligases
MTCT_1456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAM70704
LinkDB
All DBs
Position
complement(1440793..1442241)
Genome browser
AA seq
482 aa
AA seq
DB search
MSIHEELVKVRESVWEVPTSYKKGMRVPGRIFLREEALRDLEKGAIDQVANVACLPGIQK
FSIGLPDIHFGYGFSIGGVGAFSARTGVISPGGVGFDINCGVRMVRTNLDHEDVRPKIKE
LINTLFTNVPSGVGSKGKIRLKPGEIDEVLENGAEWAVENGYGWDQDLRRLEENGKMEEA
SSEKVSEKAKKRGIPQLGSLGSGNHFLEVQMVDEIFDEEAARVYGVSPGKVAVMIHSGSR
GCGHQVCSDYLRLMDKAYRRYKINIPDRQLACAPVDSDEALDYFQAMAAAANYAWANRQM
IVHWVRESFEAVFGMTAEDMEMEIVYDVAHNIAKKEVHTIKGRETEVFVHRKGATRAFGP
GRDEIPQEYRKIGQPVIIPGTMGTSSYLLHGTEVAMEETFGSTAHGAGRKMSRAGAKKTY
RGEEVQRKLESEGIYVRATSMPVVAEEAPGAYKDVDVVVRTAHETGISRLVARMLPLGVA
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagtatacatgaagaactggttaaggtgagagaatccgtatgggaagttccaacatca
tacaagaaggggatgagggtgcccgggaggatcttcctgagggaggaggccctcagggac
cttgagaagggggccatcgatcaggtggccaacgttgcctgtctcccgggtatccagaag
ttctccattggactgccagatattcacttcggttacggcttcagcattggaggtgtgggt
gccttcagcgcccgaacaggagttataagccctggaggtgttggattcgatataaactgt
ggtgtgaggatggtcaggacaaaccttgaccatgaggatgtcaggccaaagataaaggag
ctcataaacacgctcttcaccaatgtcccctccggtgttgggagtaaggggaagatacgc
ctgaaacccggggagatcgatgaggtgcttgaaaacggggctgaatgggccgttgaaaac
ggatacggctgggaccaggacctcaggcgccttgaagaaaacggtaaaatggaggaggcc
agctcagaaaaggtcagtgaaaaggccaagaagaggggcataccccagctcggatccctt
ggctcaggtaaccacttccttgaggtccagatggttgatgagatcttcgatgaggaagca
gccagggtctacggtgtgagccccggaaaggtcgccgtcatgatacactcaggttcacgt
ggctgcggccaccaggtctgctcagattacctcaggctcatggacaaggcatacaggagg
tacaagataaacatacctgacaggcagcttgcatgcgcccctgtggactcggatgaggcc
ctggattacttccaggccatggcagcagctgcaaattatgcctgggccaaccgtcagatg
atagtccactgggtcagggaatcctttgaggccgtcttcggtatgactgcagaggacatg
gagatggaaatcgtctatgacgtggcccacaacatagccaagaaggaggtccacaccata
aagggtcgtgaaacagaggtattcgtccacaggaagggggctacaagggcctttggaccg
ggaagggatgagatacctcaggagtaccggaaaatcggtcaaccggtgataataccaggg
acaatgggaacatcatcctaccttctccacggaacagaggttgccatggaggagaccttc
ggttcaaccgcccacggcgccgggcgtaagatgagccgtgcaggtgccaagaagacctac
cgcggcgaggaggtccagaggaaacttgaaagtgagggcatctatgtcagggccacctcc
atgcctgtggttgcagaggaggccccgggggcctacaaggacgtggacgtcgttgtgaga
accgcccatgaaacaggaatatcccgccttgtggcgaggatgctccccctcggcgttgcc
aagggatag
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